Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04208 ATGGTTCTCTATTCAGCAAAAACATTATTCACATTCATCTTCTTCTTCCTCGTACTTTCTCTCCCACACTTGAGTGCTTCTGCTTCCACTGATTTCTATGGATCAGTCTTGCTCAAAGCTTCTCCTATCCAATTCATTAACTCTGCCAAAGAAGTTATCACCAATCTTCAACAGGTCACCACCGTTTTATCACGCTTCAACGTTAATGCCGCCCACCCTCGTGTCTCAAATGCTATTTCCGATTGCCTCGATTTAGTCGATTTGTGCGAGGAAAATCTTCATTGGTCCATCTCCGCCATTCAAAATCCCAATGGGAAGGATAATAGTACTGGAAATGTAAACTCTGATCTAAGAACATGGCTGAGTGCTGTTCTTGTGAATCCAGACACATGTATAGAAGGATTACAAGGTACAAATGTGAAGGCTCTTGTAGCCACTCGTCTTGATCATGTAAAATCACTGGTGAAGAATCTTCTTGATCAAGTAATACCTTTCAATGATCACCTCACAACCGATATTGGCTCGGATCGTTTTCCTTCATGGATTAAAGACAACGACGTGAATCTGTTACATGCAAATAAAAATAAAGTGAATGCGGATGCTGTTGTGGCAGCTGATGGAAGTGGGAATTACAGAACCGTGATGGACGCCATAACGGCAGCACCTGAAAAGAGCAATAAAAGATATGTTATACATGTGAAAACAGGTGTTTATGTTGAGAATGTGGTGATTGATAAGAAGAAGTGGAATATTATGATCATCGGTGATGGTATGGATGCTACTGTTATCTCCGGTAGTCTCAGTAAAGTCGACGGTACTACAACTTTCAAATCAGCTACCTTTGCTGTAAAGGGTAGAGGGTTCATAGCCCGCGACGTTTCATTTCAGAACACCGCAGGTCCCGAGAAGCACCAAGCAGTGGCATTAAGATCAAGCTCTGATCTCTCTGCATTTTATCGGTGCGGGATATACGGTTATCAAGACAGCCTATACGCCCACAGCATGCGTCAATTCTATAGAGAGTGCAAAATCACTGGTACGGTGGATTTCATCTTTGGGGACGCAACAGCAGTGTTCCAGAAGTGCCAAATAGTAGCCAGGAAAAGAAAGCCTGATCAAGAGAACACTATTACTGCTCAAGGACGACAATATCCGACGCAACCAACCGGTTTCTCCTTCCAATTTTGCAACATTTCAGGAGAGAGCGGCCTAACTAACCCAACATACCTTGGTAGACCCTGGAGGAAGTACTCGCGGACAATTTTCATGCAATCCTACATGAGTGACGCGATAAAGCCAGAAGGGTGGTTAGAGTGGACCGGAAGTTTTGCTTTGGACACATTGTACTACGGTGAATACATGAACTCTGGACCGGGTGCTGTAGTCACTAACAGAGTGAGATGGTCGGGATACCATGTGTTGAATGATTCGAACGAAGCTATTAAGTACACTGTGGCTCAATTTATTGATGGGGATCGTTGGTTACCTGCCACTGGTGTTACTTACGATTCTGGTCTGACAGTAAACAATATTTAA 1536 0.4329 MVLYSAKTLFTFIFFFLVLSLPHLSASASTDFYGSVLLKASPIQFINSAKEVITNLQQVTTVLSRFNVNAAHPRVSNAISDCLDLVDLCEENLHWSISAIQNPNGKDNSTGNVNSDLRTWLSAVLVNPDTCIEGLQGTNVKALVATRLDHVKSLVKNLLDQVIPFNDHLTTDIGSDRFPSWIKDNDVNLLHANKNKVNADAVVAADGSGNYRTVMDAITAAPEKSNKRYVIHVKTGVYVENVVIDKKKWNIMIIGDGMDATVISGSLSKVDGTTTFKSATFAVKGRGFIARDVSFQNTAGPEKHQAVALRSSSDLSAFYRCGIYGYQDSLYAHSMRQFYRECKITGTVDFIFGDATAVFQKCQIVARKRKPDQENTITAQGRQYPTQPTGFSFQFCNISGESGLTNPTYLGRPWRKYSRTIFMQSYMSDAIKPEGWLEWTGSFALDTLYYGEYMNSGPGAVVTNRVRWSGYHVLNDSNEAIKYTVAQFIDGDRWLPATGVTYDSGLTVNNI 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04208 511 CDD PMEI-like_4 19 162 - -
Vifa4g04208 511 Gene3D - 194 506 IPR012334 -
Vifa4g04208 511 ProSitePatterns Pectinesterase signature 1. 225 244 IPR018040 -
Vifa4g04208 511 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 159 IPR035513 -
Vifa4g04208 511 SMART PMEI_2 22 161 IPR006501 GO:0004857
Vifa4g04208 511 Pfam Plant invertase/pectin methylesterase inhibitor 36 159 IPR006501 GO:0004857
Vifa4g04208 511 Pfam Pectinesterase 200 492 IPR000070 GO:0030599|GO:0042545
Vifa4g04208 511 ProSitePatterns Pectinesterase signature 2. 344 353 IPR033131 -
Vifa4g04208 511 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 163 IPR035513 -
Vifa4g04208 511 PANTHER PECTINESTERASE 46 496 - -
Vifa4g04208 511 FunFam Pectinesterase 194 506 - -
Vifa4g04208 511 SUPERFAMILY Pectin lyase-like 198 504 IPR011050 -
Vifa4g04208 511 NCBIfam pectinesterase inhibitor domain 43 159 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04208 Vifa-Chr4 1340558015 1340559705 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04208 12 506 Carbohydrate Esterase AT3G43270 58.835 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04208 K01051 - gmx:100777500 647.121