Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04207 ATGGCTCTCTATTCCACAAAAACAATACTCACATTCGTCTTCTTCTTCCTCATGCTCTCTCCCCCACACTTCACTGCTTCTGCTTCCACTGACTTCAACGGATCCGTCTGCCTCAAAGTTTCACCCCTTAAATTCATCAGCTCTGTTGAAGAAGTTATCACTATTATACAACAAGTCACCTCCATTTTATCACGCTTCAACGGTGTCTTCGGCCACTCTCGTCTCTCGACAGCCGTTTCCGATTGCCTCGATTTACTCGACTTGTCTGCTGACCAACTTAGTTGGTCCCTTTCCGCCTCTCAAAACCCCAAAGGGAAGGATAACAGTACTGGAAATCTAAGCTCCGATCTAAGAACATGGCTAAGCGCGGTTCTCGTGAATCCAGACACATGTATAGAAGGACTAGAGGGTACAATTGTGAAGGGTCTAGTATCAACCGGTCTTGATCGCATAATGTCTTTGGTGAAAAATCTCCTCGATGAAGTACTTCCCATCAACGACCAACTCGCAACCGCTACCACTTCGGATAAATTTCCTTCATGGATTAAACACGAGGACATGAAGCTGTTACAGGCGGATGAAGTATCTGCAGATGCTGTTGTGGCTGCTGATGGAACCGGGAATTACCTTAACGTGATGGATGCGGTAAATGCAGCCCCTGAACTCAACATGAAAAGATATGTTATATATGTGAAGAAAGGTGTTTATAATGAGAATGTTGAGATTAAGAAGAAGAAATGGAATATTATGATGGTTGGTGACGGTATCGATGCGACTGTTATCTCCGGTAGTCGGAATTTCGTCGACGGTTGGACTACTTTCCGATCAGCAACCTTTGCTGTAAGCGGTAGAGGGTTCATAGCACGCGACATTTCATTTCAGAACACAGCAGGTGCAGAGAAGCACCAAGCAGTGGCATTAAGATCAGACTCCGACCTCTCTGTATTTTATCGGTGTGGAATATTCGGTTATCAAGATAGTCTATATACACATACCATGCGTCAATTCTACCGAGAGTGCAAAATCTCTGGCACGGTGGATTTCATCTTTGGAGACGCCACAGTCGTGTTCCAGAACTGTCAAATACTAGCCAAGCAAGGACTGCCTAAACAAAAGAACACTATTACTGCACAAGGACGAAAAGATCCAAACCAACCAACCGGTTTCTCCTTCCAATTTTGTAACATTTCTGCAGACACTGACCTTCTACCGTCGGTTGGAACCATCCCAACATACCTTGGTAGACCCTGGAAGACTTATTCACGAACAATTTTCATGCAATCCTACATGAGTGGCGTGATAAGGCCAGAAGGATGGTTAGAGTGGGACGGAAGTTTTGCTTTGGACACATTGTACTACGGCGAATACATGAACTCTGGACCGGGTGCTGGACTATCTAACCGGGTGAAATGGTCAGGGTACCATGTGTTGAATGATTCGAGCGACGCCATTAAGTACACCGTGGCTCAATTTATCGAGGGAAATCTTTGGTTACCTGCTACTGGTGTAAGTTACATTGCTGGTTTGACAGTGTAA 1536 0.4499 MALYSTKTILTFVFFFLMLSPPHFTASASTDFNGSVCLKVSPLKFISSVEEVITIIQQVTSILSRFNGVFGHSRLSTAVSDCLDLLDLSADQLSWSLSASQNPKGKDNSTGNLSSDLRTWLSAVLVNPDTCIEGLEGTIVKGLVSTGLDRIMSLVKNLLDEVLPINDQLATATTSDKFPSWIKHEDMKLLQADEVSADAVVAADGTGNYLNVMDAVNAAPELNMKRYVIYVKKGVYNENVEIKKKKWNIMMVGDGIDATVISGSRNFVDGWTTFRSATFAVSGRGFIARDISFQNTAGAEKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFYRECKISGTVDFIFGDATVVFQNCQILAKQGLPKQKNTITAQGRKDPNQPTGFSFQFCNISADTDLLPSVGTIPTYLGRPWKTYSRTIFMQSYMSGVIRPEGWLEWDGSFALDTLYYGEYMNSGPGAGLSNRVKWSGYHVLNDSSDAIKYTVAQFIEGNLWLPATGVSYIAGLTV 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04207 511 ProSitePatterns Pectinesterase signature 2. 342 351 IPR033131 -
Vifa4g04207 511 Pfam Pectinesterase 198 495 IPR000070 GO:0030599|GO:0042545
Vifa4g04207 511 Gene3D - 192 509 IPR012334 -
Vifa4g04207 511 PANTHER PECTINESTERASE 47 499 - -
Vifa4g04207 511 SUPERFAMILY Pectin lyase-like 196 508 IPR011050 -
Vifa4g04207 511 FunFam Pectinesterase 192 509 - -
Vifa4g04207 511 Pfam Plant invertase/pectin methylesterase inhibitor 56 158 IPR006501 GO:0004857
Vifa4g04207 511 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 166 IPR035513 -
Vifa4g04207 511 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 169 IPR035513 -
Vifa4g04207 511 CDD PMEI-like_4 9 166 - -
Vifa4g04207 511 ProSitePatterns Pectinesterase signature 1. 223 242 IPR018040 -
Vifa4g04207 511 SMART PMEI_2 28 165 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04207 Vifa-Chr4 1339838604 1339841120 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04207 12 509 Carbohydrate Esterase AT3G43270 64.327 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04207 K01051 - gmx:100777500 721.465