Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04199 ATGTTACCTCTCACAAGCTTCGGCGAAATCATAGAAAGACATCCCGAAACACAGGATTCTTCTACTACATGTGCTGTTTGTTTGAACAAAATGAAAATGGAAGACGAGGTTCGAGAATTGATGAACTGTTCTCATGTGTTTCATAGAGAATGTATTGATAAATGGTTCGAACATGGTTATGAGAATAATGACAATTGTAATCAGACTTGTCCTCTTTGTAGAGCTCCTTTGATTACTACTACTGATTATGTTTCTTCCGAGGTTTTGACTGCTTGTGTTTCTCCTAGTCAACCTAGTTGGGCTGTTGAGAGACTTCTTTATCTCTTTGGTGATGATCTTTTGCCTTGTTAA 351 0.3761 MLPLTSFGEIIERHPETQDSSTTCAVCLNKMKMEDEVRELMNCSHVFHRECIDKWFEHGYENNDNCNQTCPLCRAPLITTTDYVSSEVLTACVSPSQPSWAVERLLYLFGDDLLPC 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04199 116 ProSiteProfiles Zinc finger RING-type profile. 24 74 IPR001841 -
Vifa4g04199 116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 91 IPR013083 -
Vifa4g04199 116 PANTHER RING ZINC FINGER PROTEIN-RELATED 13 114 - -
Vifa4g04199 116 SMART ring_2 24 73 IPR001841 -
Vifa4g04199 116 SUPERFAMILY RING/U-box 15 89 - -
Vifa4g04199 116 Pfam Ring finger domain 23 74 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04199 2 115 C3H Transcription Factor Family AT3G43430 50.000 1.04e-32 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04199 K16281 - gmx:100306203 154.451