Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04197 ATGGCAAATACTGATGGTATCAGTAATCTTGACAGTAACAGTGCCAGTGATGATGGTTCTGTCAAGAGTTTTTTTGCTAACTGGCCAATGTCAACATGTGGACTGAATGCAAAAGGTCAATTTGCCATTGTCTATAATGGAAGTATGTGTGTATATGATGGAATTCCTGCAGAAAAGGTGCAAGAAATAATGTTGATGGCTGCTGCCACTGCTAAGTCTTCTGAAATGAAAATTGGAATTCCATTCACTTCACTCTTTTCCAGTGCCGCCCCTTCTTCTCCACAAGGAACTTCTAACAATGTGCCTTCTCCTCCATCAGTCTGTTTTCCTGCTGCTGACAAGAGTTCCATTTGCAGGATGCAAGAATTTCCATTAGCACGCAGACAGTCACTTCAAAGTTTTCTTGAGAAGAGAAGGATCAGGGTACGTGGCAAAGCACCTTATACCTCTTCATCATCAAAAGCAGTTAACAACATTGACAACAACTTCAACACAGCATTGGTTCCTTCCACTTGA 516 0.4147 MANTDGISNLDSNSASDDGSVKSFFANWPMSTCGLNAKGQFAIVYNGSMCVYDGIPAEKVQEIMLMAAATAKSSEMKIGIPFTSLFSSAAPSSPQGTSNNVPSPPSVCFPAADKSSICRMQEFPLARRQSLQSFLEKRRIRVRGKAPYTSSSSKAVNNIDNNFNTALVPST 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04197 171 Pfam tify domain 38 68 IPR010399 -
Vifa4g04197 171 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 31 155 IPR040390 -
Vifa4g04197 171 Pfam Jas motif 124 148 IPR018467 -
Vifa4g04197 171 ProSiteProfiles Tify domain profile. 34 69 IPR010399 -
Vifa4g04197 171 SMART tify_2 34 69 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04197 Vifa-Chr4 1336637303 1336638816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04197 40 166 Tify Gene Family AT5G20900 39.552 5.79e-19 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vifa4g04197 tify 3.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04197 - K13464 gmx:100306655 145.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04197 4 1336637303 1336638816 Vifa1g04344 1 674787630 674789561 PCT