Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04183 ATGGAAACATCAAAACAAATTGATGTTCATCATCAAGCTCAATCATCTTCATCTTCATCTTCTTCAATAGATAGTAACAATTACAATCACCCTTCTGCAATCTCAAGTCTCTGCAGAACAGCCGATTTAAGCACTGATCTCAAACTCGGTCTAAGCATCTCTCCATCTTCTCAATCTCAATTACCAGTCAATTCAACAACAACCTCAAAGGAAGAAACACTTGATTGGCCACCAATTAATAAGTCCATATTGAGAAGAAACACTTTGGCTGAAAAACAAAACCATTGTATACAAAGACAAAGATCTTTGTTTGTTAAGGTTTATATGGAAGGAATCCCAATTGGAAGAAAACTAAATCTTTTGGAACATCATAGTTATGATGAACTTGTTAAAGCCCTTTGTCATATGTTTAGGACAATCATTCTCTGTCCCAATTCGCAACCACTAAATTCTTGGAATTTTCATGTTCTAACTTACGAAGATAAAGAAGGAGACTGGATGATGGTCGGAGATGTTCCTTGGGAGATGTTTTTGTCATGTGTGAAGAGGCTGAAGATCACAAGAGCTGATAGCTGCTAG 579 0.3661 METSKQIDVHHQAQSSSSSSSSIDSNNYNHPSAISSLCRTADLSTDLKLGLSISPSSQSQLPVNSTTTSKEETLDWPPINKSILRRNTLAEKQNHCIQRQRSLFVKVYMEGIPIGRKLNLLEHHSYDELVKALCHMFRTIILCPNSQPLNSWNFHVLTYEDKEGDWMMVGDVPWEMFLSCVKRLKITRADSC 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04183 192 MobiDBLite consensus disorder prediction 1 26 - -
Vifa4g04183 192 Pfam AUX/IAA family 59 188 IPR033389 -
Vifa4g04183 192 MobiDBLite consensus disorder prediction 8 26 - -
Vifa4g04183 192 Gene3D - 97 192 - -
Vifa4g04183 192 ProSiteProfiles PB1 domain profile. 102 191 IPR000270 GO:0005515
Vifa4g04183 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 44 190 IPR003311 GO:0005634|GO:0006355
Vifa4g04183 192 SUPERFAMILY CAD & PB1 domains 100 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04183 Vifa-Chr4 1332034759 1332035683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04183 87 190 B3 DNA Binding Superfamily AT2G46530 35.577 1.02e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vifa4g04183 AUX_IAA 4.9e-35 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04183 4 1332034759 1332035683 Vifa4g04183 4 1332034759 1332035683 ECH