Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04173 ATGTGCAGAGACAGTAATACTCCCTCTCTCCACACTTGCTACCGTCCCTCCTCTCTTCAATCTAAACACACAAACAATTTCCACACAATTAACAACACACCTTCAATACACGAACCTAATCTGTTCAAACCCCCACCTTCCTCCTCTCGCCACTGTCCATCACCCTCATCATCAGACAAGCCCCTCCGATTGCCCCTTCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTGCCTATGGGACGTGTTGAGACTGGTGTCATCACACCTGGAATGGTGGTCACTTTTGCTCCATCTGGACTATCAACTGAAGTCAAGTCTGTTGAGATGCACCATGAAGCTCTCACGGAGGCCCTTCCCGGTGACAATGTTGGGTTTAATGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGTTTTGTTGCCTCTAACTCCAAGGATGACCCAGCCAAGGAGGCTGCTAACTTTACCTCTCAAGTGATCATCATGAATCACCCTGGTCAGATTGGAAATGGCTATGCCCCTGTTCTTGACTGCCATACCTCATACAACTGCCACCTTAGACCACCAGACCTCTTCTGCAGATCCACGCCGCCATGA 600 0.485 MCRDSNTPSLHTCYRPSSLQSKHTNNFHTINNTPSIHEPNLFKPPPSSSRHCPSPSSSDKPLRLPLQDVYKIGGIGTVPMGRVETGVITPGMVVTFAPSGLSTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSYNCHLRPPDLFCRSTPP 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04173 199 CDD EF1_alpha_II 58 148 - -
Vifa4g04173 199 Pfam Elongation factor Tu domain 2 76 141 IPR004161 GO:0005525
Vifa4g04173 199 MobiDBLite consensus disorder prediction 1 38 - -
Vifa4g04173 199 FunFam Elongation factor 1-alpha 57 144 - -
Vifa4g04173 199 Gene3D Translation factors 151 186 - -
Vifa4g04173 199 Gene3D Translation factors 57 144 - -
Vifa4g04173 199 Pfam Elongation factor Tu C-terminal domain 149 182 IPR004160 -
Vifa4g04173 199 MobiDBLite consensus disorder prediction 1 62 - -
Vifa4g04173 199 SUPERFAMILY Translation proteins 59 183 IPR009000 -
Vifa4g04173 199 PANTHER ELONGATION FACTOR 1 ALPHA 52 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04173 Vifa-Chr4 1328048930 1328050615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04173 58 183 Eukaryotic Initiation Factors Gene Family AT5G60390 92.063 1.60e-80 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04173 K03231 - gmx:110008577 246.899