Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04171 ATGCTGTTGCTAGCTACAAAAATGGAAGCCAAAGTTGGATTGAAGAAATTGCTAAAAGCTGAAGAACTGCTCTTTGATAAATATACTGTAGGACTTGGATGCAGTGATCTGAGTTTGAGTCTGAATAATAATAACAACAACAACTCAGAAGAGGTTCACCGGAATCAAGAACAGCCTATCCCCTTACTCAAATTAGGGTGGATGGAAACGAAGGTAGAGGAGATGAAGAAGGAGAATCAGATCTTGAGATCTATGTTAAATCAAGTAACTCAACACTATGCACTTCTTCACACTCAATTCATAACACTGACGCAGCAACAGAAACAGCAGCAAGAACTGTTTCCATCACCAAATAAAATCAATAAACAAATTATAGTGGAGGATCAATCATCTGAATTAGGTTCTTGCAGAAAAAAAGGTAGAGTGTCCATTAGGGCACCATCAAATTTCTCATTGATGAGTGATGGATGTAGATGGAGAAAGTATGGACAAAAGATTTCAAAGGTTAATCCATGTCCTAGGGCCTACTATCGTTGCAATATGGGAGAAACAACACCATGTCCAGTTCGTAAGCAGGTTCAAAGATGTTCGGTTGATGGGACAGTTTTCATCGCAACCTATGAAGGAAATCATAATCACTCACTTCCACCAGAAGCCAGGTTGACAGCAAACACAACATCAGCAGCATTAAGCATGTTTCTATCTGGTTCAACCACCAGTTTACATGGCAACACTCTCTCAAATCCATGTCTCTTCTCTCCATCAACATCATCATCATCTTCTAGTATTTCTTCTACCTCCACAGGCTTGTCTACTTTCTATTCATATGCATCATCATGTCCCACTGTAACATTGGACTTAACCCAACCCTCTACAAACTTCTTCAAATCCCAAACGCCCATTTCTCCAAACCAGTACTACAGTACTCATCAATCTCAAGAGGAATTGTGTTTGTCTTCTAAGCTTTCAAATGCCATGATACCTTCAGAAAAAAACGTTCCCTTCATGGATGGTGTGATTGCAGCTATAATAAAGGATCCTTCTGTTAAGGCAGCATTAGATACAGCTGTTTCTTCACTCACTGGAGTAGTGTTGCATCAGTGA 1104 0.3967 MLLLATKMEAKVGLKKLLKAEELLFDKYTVGLGCSDLSLSLNNNNNNNSEEVHRNQEQPIPLLKLGWMETKVEEMKKENQILRSMLNQVTQHYALLHTQFITLTQQQKQQQELFPSPNKINKQIIVEDQSSELGSCRKKGRVSIRAPSNFSLMSDGCRWRKYGQKISKVNPCPRAYYRCNMGETTPCPVRKQVQRCSVDGTVFIATYEGNHNHSLPPEARLTANTTSAALSMFLSGSTTSLHGNTLSNPCLFSPSTSSSSSSISSTSTGLSTFYSYASSCPTVTLDLTQPSTNFFKSQTPISPNQYYSTHQSQEELCLSSKLSNAMIPSEKNVPFMDGVIAAIIKDPSVKAALDTAVSSLTGVVLHQ 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04171 367 SMART WRKY_cls 153 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g04171 367 Gene3D WRKY domain 138 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g04171 367 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 50 361 IPR044810 GO:0003700
Vifa4g04171 367 Coils Coil 72 92 - -
Vifa4g04171 367 SUPERFAMILY WRKY DNA-binding domain 148 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g04171 367 ProSiteProfiles WRKY domain profile. 148 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g04171 367 Pfam WRKY DNA -binding domain 155 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04171 Vifa-Chr4 1327101684 1327106803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04171 125 289 WRKY Transcription Factor Family AT4G04450 51.515 5.33e-46 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa4g04171 WRKY 5.8e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04171 - - psat:127138760 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04326 1 670954008 670977272 Vifa4g04171 4 1327101684 1327106803 PCT