Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04168 ATGGACCCAGAAGACTGGGATTTGAGCGCCGAAGACCTCGATTCCCTTGAAAGAGACGCTTTTCAGAAAATTGCTCAACTCCGCTCCCACCCTCCTCCTCCTCCTTCAAACCCCTCTCCCGCTTCACGTTTTCAAAGAGTTGATGCTTTGCCTCAAGGAGCTAGAACACTCCCCCCTTCATTGAAACCAGTGACAACAAACAACACTAACAAGAATGAACAAGTTAAAGAATTGACAAAAGCTTCTGTCAAATTTTTTCTTCATTCAAGTGGAAATATTGCAGCAAAGTTCCTATATGACCAGGTAATAGTTGCTGCTTTTAGAAGAATCCCTAAATCTATTTGGAATGCTAAAGAACGGTTATGGTTGTTCCCTCTATCTTCTTTGTCAGAAGCAGAAAAGGTTCTCAGAGAAATATCTGGTTATAATGTTCAGGTGGAGAACTTAGATCCCTTAGTGCAGCGTGCTATTGCTGCTGCCACTTCTGTTCCCGATCTTCGAGATCAATATGATAAGATCCCTGACTATGTTGAAACAAAGCTTTTGCCATTTCAGCGAGACGGTATAAGGTTTATATTGCAGCATGGATGTCGTGCTTTTTTAGCGGATGAAATGGGACTGGGGAAAACGTTGCAGGCCATTTCTGTAGCTGCATGTGTTCAGGATTCTTGGCCTGTTCTCATTCTCACGCCATCTGCATTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATCCTTGTTGTCTTATCTCAAAGTGGTGGGTCAAATAGAGGAGGTTTCAATATAGTATCTCCTCCAAGTGCCAAAAACAGCATTCATCTGGATGGACTATTCAACATTATCTCATATGATATGGTGGCAAAGCTACAAAATACGCTTATGGAGTCTGACTTTAAGGTTGTAATTGCTGATGAGTCACACTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCAGTTATAAAGAAAGCTAAATATGCAATATTGCTTAGTGGAACTCCTGCTTTATCCCGACCAATTGAACTATTCAAACAGCTGGAAGCTTTGTATCCTGATGTGTATAAGAATGTTCATGAATATGGTAACCGGTATTGCAAGGGTGGATTTTTTGGACTTTATCAAGGGGCAAGTAATCATGAAGAATTGCACAATTTGATGAAGGCAACATCGATGATTCGGAGGCTTAAAAAGGATGTTCTTTCTGAACTTCCTGTTAAGCGTAGGCAACAAGTCTTCCTAGATTTGGCTGACAAGGACATGAAGCAAATTAATGCTCTATTTCGGGAGTTGGAGATGGTAAAAGCCAAAATTAAGGCAGCTAAATCACAAGAGGAGGCTGAATCACTCAAGTTTACTGAAAAGAATCTTATTAACAAGATTTATACTGATTCTGCTGAAGCCAAGATTCCCGCTGTTCTTGATTATCTTGGAACTGTAATCGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCTATCAATGATTGATGCAATACACGAGTTTCTTCTGAAAAAAAAGGTTGGTTGCATCCGGATTGATGGAGGTACACCTTCTGGATCAAGGCAACAGTTGGTTACAGAGTTTCAGGAAAAAGATTCTATCAAGGCAGCAGTGCTATCTATCAAAGCTGGAGGTGTCGGGTTAACATTGACCGCTGCCAGCACCGTCCTCTTTGCAGAATTGTCTTGGACTCCTGGTGATCTAATTCAGGCTGAAGACCGTGTTCATAGAATTGGACAGGTGTCTTCAGTAAATATATACTACTTGCTTGCAAATGACACAGTTGATGATATCATGTGGGACGTAGTGCAAAGCAAACTGGACAATTTGGGACAGATGCTTGATGGCCATGAGAACACCTTAAAGGTCTCAGATGATCAACCACTACTGAGAAGCCCTGCAAAGTACTTAAAGGTCTCAGATGATCAACCGCCAGTGAGAAGCCCTGCAAAGCAGAAAACACTTGATCATTTTGTCAGAAGATGTGACAACAGCACGAGTGGATTGGAACATGGGTCATCCCCCAAACGTCCCCGGTACTGA 2079 0.418 MDPEDWDLSAEDLDSLERDAFQKIAQLRSHPPPPPSNPSPASRFQRVDALPQGARTLPPSLKPVTTNNTNKNEQVKELTKASVKFFLHSSGNIAAKFLYDQVIVAAFRRIPKSIWNAKERLWLFPLSSLSEAEKVLREISGYNVQVENLDPLVQRAIAAATSVPDLRDQYDKIPDYVETKLLPFQRDGIRFILQHGCRAFLADEMGLGKTLQAISVAACVQDSWPVLILTPSALRLQWASMIQQWLNIPSSDILVVLSQSGGSNRGGFNIVSPPSAKNSIHLDGLFNIISYDMVAKLQNTLMESDFKVVIADESHFLKNAQAKRTTASLPVIKKAKYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGFFGLYQGASNHEELHNLMKATSMIRRLKKDVLSELPVKRRQQVFLDLADKDMKQINALFRELEMVKAKIKAAKSQEEAESLKFTEKNLINKIYTDSAEAKIPAVLDYLGTVIEAGCKFLIFAHHLSMIDAIHEFLLKKKVGCIRIDGGTPSGSRQQLVTEFQEKDSIKAAVLSIKAGGVGLTLTAASTVLFAELSWTPGDLIQAEDRVHRIGQVSSVNIYYLLANDTVDDIMWDVVQSKLDNLGQMLDGHENTLKVSDDQPLLRSPAKYLKVSDDQPPVRSPAKQKTLDHFVRRCDNSTSGLEHGSSPKRPRY 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04168 692 CDD DEXHc_HARP_SMARCAL1 181 405 - -
Vifa4g04168 692 ProSiteProfiles HARP domain profile. 74 151 IPR010003 -
Vifa4g04168 692 SMART ultradead3 177 371 IPR014001 -
Vifa4g04168 692 Coils Coil 434 454 - -
Vifa4g04168 692 Pfam Helicase conserved C-terminal domain 483 591 IPR001650 -
Vifa4g04168 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 638 IPR027417 -
Vifa4g04168 692 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 483 634 IPR001650 -
Vifa4g04168 692 MobiDBLite consensus disorder prediction 24 44 - -
Vifa4g04168 692 Gene3D - 442 676 IPR027417 -
Vifa4g04168 692 Gene3D - 153 430 IPR038718 -
Vifa4g04168 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 399 IPR027417 -
Vifa4g04168 692 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 190 363 IPR014001 -
Vifa4g04168 692 MobiDBLite consensus disorder prediction 652 692 - -
Vifa4g04168 692 CDD SF2_C_SNF 478 602 - -
Vifa4g04168 692 FunFam Chromatin remodeling factor18 154 429 - -
Vifa4g04168 692 Pfam SNF2-related domain 195 459 IPR000330 GO:0005524|GO:0140658
Vifa4g04168 692 SMART helicmild6 508 591 IPR001650 -
Vifa4g04168 692 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 678 - -
Vifa4g04168 692 FunFam Chromatin remodeling factor18 440 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04168 Vifa-Chr4 1325146591 1325154484 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04168 478 618 RAD5 or RAD16-like Gene Family AT5G22750 34.043 1.32e-17 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa4g04168 SNF2_N 1.3e-27 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04168 K14440 - gmx:100797654 1087.79