Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04159 ATGGATGACATGCATGAAGAATCCAACAAGAACGAGGTGAAGGATCAAAGAATCAAGACAGTTCCATTTTACAAGCTTTTCTCGTTCGCGGACTCTTGGGATCATTTTTTGATGATTGTTGGAACTATAAGTGCTGTTGGGAATGGAGTCTCTACGCCTTTGATGACTATAATTATCGGAGATGCTGTTGATAGTTTCGGAGGAAATGCAAACAATAAACAAGTAGTTCATCAAGTTTCAAAGGTGTCTCTCAACTTTGCAATCACGGGTGCATGCGCCTTTTTAGCAGTGTTTCTACAGGTGGCTTGTTGGATGATCACGGGCGCGAGACAGACTGCGAGAATAAGGGCATTATATCTCAAAGCGATTTTACGACAAGATATCAGTTTCTTTGACAAGGAAACAAACAGTGGTGAGGTTGTTGGAAGAATGTCAGGTGACACAGTTCTTATTCAAGATGCCATGGGAGAGAAGGTAGCAAATTTCATACAGTATATGTCGTGTTTTTTCGGAAGTTTAGTGGTGGCATTCGTCAAGGGTTGGCTTCTAGCCCTTGTGCTTTTATCAACTCTTCCTCTTCTTATCCTCTCTGGTTCAATAATGAGCTGTACTTTTGCAAAGATGGCATCTCGTGGACAAACAGCTTATTCCGAAGCAGCAACTATTGTAGAACGGAAAATCAGTTCAATTCGGACGGTTGCGTCATTTACCGGAGAGAAGCAAGCTATAGGTCAATACAATCAATCCTTAACTAAAGCTTACAAAATTGGAGTACGAGAGGGATTGGCTATTGGTTTAGGCCTCGGTTCGGTTCGTTTATTTGTTTATTGCACTTATATTTTGACTGTATGGTTTGGAGGAAAGATGATACTAGAGAAAGATTATACCGGAGGTGAAGTCATAAGTGTATTTTTCGCTATACTAACAGGTTCCTTGACCCTGGGACAGGCATCTCCATGCTTAATTTCATTTGCTGCTGGACAAGCTGCGGCGTTAAAGATGTTTGAAACGATTCAAAGGAAGGCAGAGATTGATGCTTATGATACTACTGGGAGAAAGCTCGATGACATTCGCGGAGACATAGAGGTTAGGGAGGTTTGCTTTAGCTATCCTACAAGACCGAATGAAATGATATTGAATGCATTTTCTATTTCAATATCAAGTGGTACTACCGCGGCTATGGTCGGGCAAAGTGGAAGTGGGAAATCAACAGTTATTAGTTTGATAGAGAGGTTTTATGATCCACAAGGTGGTGAAATTCTCATTGATGGAATTGACCTTAGAGAATTCCAACTGAAATGGATCAGACAGAAAATAGGTCTAGTCAGTCAGGAACCGGTTCTTTTTGCTTGTAGCATTAAAGAGAATATTGCCTATGGTAAGGATACAGCAACCGATGAAGAAATCAGAGATGCGGCAGAACTTGCTAATGCTGCTAACTTTATTGATAAGTTTCCTAATGGGCTTGAAACGATGGTCGGCGAGCATGGAGCTCAGCTTTCTGGAGGCCAAAAGCAAAGAATTGCTATAGCAAGAGCAATTCTCAAAGATCCAAGAATTCTACTCCTTGATGAAGCAACAAGTGCACTTGATGCAGAATCTGAAAGAGTGGTACAAGAGACACTAGACAAAATTATGATAAACCGAACAACCATCATCGTAGCACATCGCCTTAGCACAATAAGGAATGCTGACAGCATTGCTGTTATTCACCAGGGAAAAGTAGTAGAAAAAGGTACACATGCTGAGCTCACTAAGGATCTGGATGGAGCTTATAGTCAACTTATTAGGTTGCAAGAAATTAAAAGGGATTCATCAGAGCAATATGGTGCTAATGACTCAGGTAAGTTAGAAAATTTTGTAGAATCTGGAAGAAAGTCAAGCCAACGGTCTTTAAGCCGCGGATCGTCTGAGATTGGGCACAGCAGTCGCCATTCATTCAGAGTATCAACTTCTATACCTCCCACACTAGTAGGAGGATCTGAACTTGTTTCCTCACCGGCAACATCATCGCCAAAAAGTAAAACTCAAAATGTCCCGTACCTCCGCCTCGCTTATCTTAACAAGCCTGAAATCCCAGCGTTACTCATAGGGACAATAGCAGCAGCAGTAACTGGTGCAATGCTACCAATTCTAGGACTTCTAGTCTCCAAAATGATACATACATTCTTTGAGCCTGCAGATAAACTTCGTAAAGACTCGAAGTTTTGGGTTTTAATATTTGTTTCCCTTAGCGTGGTATCATTCACTTTTCATCCAATAAGGTCATACTTTTTTGCTGTAGCTGGTTGTAAGTTGATAAAAAGGATCCGGTTAATGTGCTTCGAGAAAATAATTCACATGGAAATAGGCTGGTTTGATAAAGCTGAGAATTCAACTGGTGCACTTGGTGCAAGGCTTTCAACTGATGCTGCTTCGATTCGAACTTTAGTTGGAGATGCACTTGGTTTAATGGTTCAAGATATTTCAACAGTTATTACAGCATTGGTAATTTCCTTTGAAGCGAGTTGGCAGCTTTCTCTCATCATTCTTGCTTTGATACCTATACTATTAGTAAGTGGACATTGGCAAAAGACGTACATGCAAGGATTTAACACAGATGCAAAGAAACTATACGAGGAAGCAAGTCAAGTAGCGAACGATGCAGTAGGAAATATCAGAACAGTTTCTTCTTTCTGTGCCGAAGAGAAGGTGATGGAGTTATACCAGAAGAAATGTGTAGTACCAGTCCAAACAGGAAAAAGACAAGGTTTAGTCAGTGGAACTAGTTTGGGCTTAGCCATTTTTCTTTTCTTCTGTTTCTATGCATGCAGTTTTTATGCCGGCGCCCGACTTGTTGAGAAGGGCAAAACATCAATGTCAGAAGTTTTTCAAGTATTTTACTCTCTCACAATGGCAGCCACTGCGATATCTCAATCCACCTTCATGGCTCCAGGAGCTAGTAAAGCAAAAAGTTCTGTTGATTCAGTATTTGCTATTCTTGATCAGAAATCAGAAATAGACCCTAGTGATGAATCAGGAATGATACTGGAAGATGTGAAGGGAGAGATCGAGTTCCGTCATGTCACTTTCAAGTATCCAACTAGACCTGATGTTCATATATTCAAAAATCTTTCCTTAACCATTCATTCAGGACAGACAGTTGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACTTTGATATCATTGTTGCAAAGATTTTATGATCCAGATTCAGGTCAGATTAAACTGGATGGAACAGAAATTCAAAAGCTACAACTTAAATGGTTTAGGCAACAAATGGGCCTGGTAAGCCAAGAGCCTGTGTTGTTCAATGACACCATCAGAGCCAACATTTCCTATGGAAAAGGTGGTAATGCATCCGAGGCTGAAATTATCGCTGCCGCAGAACTGGCAAATGCTCATAAGTTCATTAGCAGCTTGCAGCAGGGGTATGATACAATAGTAGGGGAGAAAGGGATTCAACTATCTGGAGGACAGAAGCAACGTGTGGCAGTTGCAAGAGCCATAGTTAACAGTCCAAGAATATTGTTATTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCGAGATTCACTTGATAGAGTGAGGATGGACAGAACAACCATTGTGGTGGCTCATAGATTATCTACCATAAAAGATGCAAATTCAATTGCTGTTGTTAAAAATGGAGTGATTGAAGAGAAAGGAAAACATGACACATTGATTAACATGGGTGGTACCTATGCTTCTTTAGTAGCACTGCACACAAATGCTAATGCTTCATCTTAA 3789 0.4067 MDDMHEESNKNEVKDQRIKTVPFYKLFSFADSWDHFLMIVGTISAVGNGVSTPLMTIIIGDAVDSFGGNANNKQVVHQVSKVSLNFAITGACAFLAVFLQVACWMITGARQTARIRALYLKAILRQDISFFDKETNSGEVVGRMSGDTVLIQDAMGEKVANFIQYMSCFFGSLVVAFVKGWLLALVLLSTLPLLILSGSIMSCTFAKMASRGQTAYSEAATIVERKISSIRTVASFTGEKQAIGQYNQSLTKAYKIGVREGLAIGLGLGSVRLFVYCTYILTVWFGGKMILEKDYTGGEVISVFFAILTGSLTLGQASPCLISFAAGQAAALKMFETIQRKAEIDAYDTTGRKLDDIRGDIEVREVCFSYPTRPNEMILNAFSISISSGTTAAMVGQSGSGKSTVISLIERFYDPQGGEILIDGIDLREFQLKWIRQKIGLVSQEPVLFACSIKENIAYGKDTATDEEIRDAAELANAANFIDKFPNGLETMVGEHGAQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQETLDKIMINRTTIIVAHRLSTIRNADSIAVIHQGKVVEKGTHAELTKDLDGAYSQLIRLQEIKRDSSEQYGANDSGKLENFVESGRKSSQRSLSRGSSEIGHSSRHSFRVSTSIPPTLVGGSELVSSPATSSPKSKTQNVPYLRLAYLNKPEIPALLIGTIAAAVTGAMLPILGLLVSKMIHTFFEPADKLRKDSKFWVLIFVSLSVVSFTFHPIRSYFFAVAGCKLIKRIRLMCFEKIIHMEIGWFDKAENSTGALGARLSTDAASIRTLVGDALGLMVQDISTVITALVISFEASWQLSLIILALIPILLVSGHWQKTYMQGFNTDAKKLYEEASQVANDAVGNIRTVSSFCAEEKVMELYQKKCVVPVQTGKRQGLVSGTSLGLAIFLFFCFYACSFYAGARLVEKGKTSMSEVFQVFYSLTMAATAISQSTFMAPGASKAKSSVDSVFAILDQKSEIDPSDESGMILEDVKGEIEFRHVTFKYPTRPDVHIFKNLSLTIHSGQTVALVGESGSGKSTLISLLQRFYDPDSGQIKLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANISYGKGGNASEAEIIAAAELANAHKFISSLQQGYDTIVGEKGIQLSGGQKQRVAVARAIVNSPRILLLDEATSALDAESEKVVRDSLDRVRMDRTTIVVAHRLSTIKDANSIAVVKNGVIEEKGKHDTLINMGGTYASLVALHTNANASS 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04159 1262 CDD ABC_MTABC3_MDL1_MDL2 361 599 - -
Vifa4g04159 1262 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1017 1254 IPR003439 GO:0005524
Vifa4g04159 1262 MobiDBLite consensus disorder prediction 606 653 - -
Vifa4g04159 1262 Gene3D ABC transporter type 1, transmembrane domain 25 607 IPR036640 GO:0005524|GO:0016020
Vifa4g04159 1262 PANTHER ABC TRANSPORTER B FAMILY 5 603 IPR039421 -
Vifa4g04159 1262 FunFam ABC transporter B family member 1 675 980 - -
Vifa4g04159 1262 CDD ABC_6TM_Pgp_ABCB1_D1_like 38 334 - -
Vifa4g04159 1262 CDD ABC_MTABC3_MDL1_MDL2 1017 1252 - -
Vifa4g04159 1262 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 361 597 IPR003439 GO:0005524
Vifa4g04159 1262 SMART AAA_5 388 574 IPR003593 GO:0016887
Vifa4g04159 1262 SMART AAA_5 1044 1238 IPR003593 GO:0016887
Vifa4g04159 1262 FunFam ABC transporter B family member 1 351 600 - -
Vifa4g04159 1262 FunFam ABC transporter B family member 9 25 357 - -
Vifa4g04159 1262 Pfam ABC transporter 379 528 IPR003439 GO:0005524
Vifa4g04159 1262 Gene3D ABC transporter type 1, transmembrane domain 675 983 IPR036640 GO:0005524|GO:0016020
Vifa4g04159 1262 Gene3D ABC transporter type 1, transmembrane domain 984 1260 IPR036640 GO:0005524|GO:0016020
Vifa4g04159 1262 Pfam ABC transporter 1036 1185 IPR003439 GO:0005524
Vifa4g04159 1262 SUPERFAMILY ABC transporter transmembrane region 683 1002 IPR036640 GO:0005524|GO:0016020
Vifa4g04159 1262 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 696 982 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa4g04159 1262 MobiDBLite consensus disorder prediction 621 653 - -
Vifa4g04159 1262 FunFam Uncharacterized protein 981 1007 - -
Vifa4g04159 1262 CDD ABC_6TM_Pgp_ABCB1_D2_like 685 1000 - -
Vifa4g04159 1262 Gene3D - 1007 1256 IPR027417 -
Vifa4g04159 1262 Gene3D - 351 600 IPR027417 -
Vifa4g04159 1262 Pfam ABC transporter transmembrane region 38 312 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa4g04159 1262 Pfam ABC transporter transmembrane region 695 966 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa4g04159 1262 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 39 326 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa4g04159 1262 ProSitePatterns ABC transporters family signature. 500 514 IPR017871 GO:0005524|GO:0016887
Vifa4g04159 1262 SUPERFAMILY ABC transporter transmembrane region 25 343 IPR036640 GO:0005524|GO:0016020
Vifa4g04159 1262 FunFam ABC transporter B family member 1 1007 1256 - -
Vifa4g04159 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1006 1254 IPR027417 -
Vifa4g04159 1262 ProSitePatterns ABC transporters family signature. 1157 1171 IPR017871 GO:0005524|GO:0016887
Vifa4g04159 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 599 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04159 Vifa-Chr4 1323305105 1323309968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04159 12 1255 Calmodulin-binding Proteins AT2G36910 42.572 0.0 1024
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04159 K05658 - gmx:100777713 1881.3