Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04156 ATGGTGATATTGAACCTTGGAAAGAAGCAGATTAACAAGTTGGAAAATGAAGGAGTGAGACTAGGGAAATATGAATTGGGTAGGACTCTTGGTGAGGGCAATTTCGGTAAAGTAAAGTTTGCTAGGAACACTGATTCTCAACAACCTTATGCTATTAAGATTGTTGACAAGAACAAGATCATTGATCTCAATATTACCAACCAGATAAAGAGGGAAATAAGTGCCTTGAAGCTTCTAAGGCATCCCAATGTTGTTAAATTATATGAGGTATTGGCTAGTAAAACAAAAATTTGCATGGTACTTGAGTATGTGACAGGACAAGAGTTATTTCACAAAATTGCTTCCAAGGGTAAACTTAATGAAACTGAAGGTAGAAAGTTGTTCCAGCAGTTGATTGATGGTGTCAGCTACTGCCACAGCAAAGGTGTCTTCCATAGAGATATCAAGCTTGAGAATCTACTTGTGGATGCCAAAGGAAATTTGAAGATAACTGATTTTGGCCTTAGTGCTTTACACCAACAATTTAGGGAAGATGGGTTGTTGCATACAACATGTGGAAGTCCAAATTATGTTGCACCGGAGATTCTTGCTAATAGGGGCTATAATGGTGCATCATCAGATGTATGGTCATGTGGTGTTATCTTGTATGTAGTTCTAACAGGATATCTACCTTTTGATGATAGAAATCTTGCAGTTCTCTATCAGAAGGTTTCGAAAGGAGATTGTCAGATACCGAAATGGTTATCATCTGGTGCACAAAACATTATAAAGAGGATTCTTGATCCAAACCCTGAAACCAGAATAACAATGGCGGGGATCAAAGAAGACTTGTGGTTCAAGGAAGGATATAATCAAGCAGATCCTGAGGACGAGGATGAAGATGTATATGTTGACAATCAAGCTTTTTCCGTCAACGAATTGACAAATGACGAAGAAAAAAAGAGTTCGGAATCTCCAATCTGTATCAATGCATTTCAGTTGATAGGGATGTCTTCAAGCCTAGACCTGTCTGGATTATTTGAGAACGAGGAAGTATCCGAGAGGAAGATAAGGTTTACAACTAACCTGTCAGCCAAAGATCTGACGAAGAAGATTGAAGATTCCATGACAGAAACGGAATTTAGAGTTCAAAAGAAAAACGGCAAAATAAAAGTGATACGAGAAAATAAGGAGCATAAAACCCCTGGCAGCCTCTCGGTGACAATAGAGGTTTTTGAAATAAGTTCATCGTTGTATGTAGTAGAGATAAGAAAGTGTTATGGAGATGCTTCTGTATATAGACAGTTATGCAAGAAACTATTAAATGATCTTGGGGTTTCCCAAGGAAAGCACTAG 1335 0.3813 MVILNLGKKQINKLENEGVRLGKYELGRTLGEGNFGKVKFARNTDSQQPYAIKIVDKNKIIDLNITNQIKREISALKLLRHPNVVKLYEVLASKTKICMVLEYVTGQELFHKIASKGKLNETEGRKLFQQLIDGVSYCHSKGVFHRDIKLENLLVDAKGNLKITDFGLSALHQQFREDGLLHTTCGSPNYVAPEILANRGYNGASSDVWSCGVILYVVLTGYLPFDDRNLAVLYQKVSKGDCQIPKWLSSGAQNIIKRILDPNPETRITMAGIKEDLWFKEGYNQADPEDEDEDVYVDNQAFSVNELTNDEEKKSSESPICINAFQLIGMSSSLDLSGLFENEEVSERKIRFTTNLSAKDLTKKIEDSMTETEFRVQKKNGKIKVIRENKEHKTPGSLSVTIEVFEISSSLYVVEIRKCYGDASVYRQLCKKLLNDLGVSQGKH 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04156 444 FunFam Non-specific serine/threonine protein kinase 319 441 - -
Vifa4g04156 444 ProSiteProfiles NAF domain profile. 317 341 IPR018451 GO:0007165
Vifa4g04156 444 SMART serkin_6 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04156 444 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04156 444 FunFam Non-specific serine/threonine protein kinase 17 319 - -
Vifa4g04156 444 Gene3D Transferase(Phosphotransferase) domain 1 104 307 - -
Vifa4g04156 444 Pfam NAF domain 321 378 IPR004041 GO:0007165
Vifa4g04156 444 Gene3D Kinase associated domain 1, KA1 316 439 - -
Vifa4g04156 444 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04156 444 CDD CIPK_C 323 434 - -
Vifa4g04156 444 FunFam Non-specific serine/threonine protein kinase 15 103 - -
Vifa4g04156 444 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 422 - -
Vifa4g04156 444 Gene3D Phosphorylase Kinase; domain 1 8 103 - -
Vifa4g04156 444 SUPERFAMILY Protein kinase-like (PK-like) 20 301 IPR011009 -
Vifa4g04156 444 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Vifa4g04156 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04156 Vifa-Chr4 1321685265 1321694477 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04156 87 440 CBL-interacting serine-threonine protein kinases AT3G17510 67.887 5.88e-170 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa4g04156 Pkinase 2.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04156 K07198 - gmx:100777468 679.478