Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04143 ATGTCTTTTAAGGCCCTCTTGCTTTGCTTACGCACTTTTTTCTATAATATATTCTTCTTCTCTTCTTACCCGGGGCAAACACAAAACCATCTATATTCTTTTAATATCTCTGCGTTTAACTTCATCATCCATTTTTGTGGTCCACAATCTCTGCAATTTCTAACAGAAAATAGGATTATGGGTTGCTTTGGCTTCTGCAAAGAGAATGATTCTTATACTACTGCTGACAGAGGAAACTTCATGCAAAACAATCCTACTGGGAACTCTAGTTATCATGGACGACACACGGCAGTAACCATTCCTCGGCCTATAAATCTCCAACCTATTTCTGTGCCTTATATTACAGTAGATGAATTGAAGTCTGTGACAGATAATTTTGGTACAAAGTCTTTTCTTGGTGAAGGTGCATATGGGAAAGTATATCGCGCCATGTTGAAAACGGGACGGGAAGTTGCGATTAAAAAGTTGGACTCGAGTAAACAGCCAGACCAAGAATTTCTTTCTCAGGTCTCCATCGTTTCAAGGCTAAAGCATGAAAACGTTGTCGAGCTTCTTACTTACTGTGTTGACGGCCCTTTCCGTGCCCTTGCTTATGAGTATGCACCAAATGGATCCCTTCATGACATTCTACATGGGCGCAAAGGTGTAAAAGGTTCAGAACCTGGTCAAGTTCTGTCATGGGCTCAAAGAGTTAAAGTCGCAGTTGGAGCAGCTAGAGGACTTGAGTATCTTCATGAAAAGGCAGAAGTTCATATTGTCCATCGTTACATTAAATCTAGTAACATACTTCTATTCGAGGACGACATGGCAAAGATTGCTGATTTTGATCTGTCGAATCAAGCCCCTGATGCAGCAGCGCGTCTTCATTCTACCCGTGTTCTCGGAACCTTTGGTTATCATGCTCCAGAATATGCAATGACTGGAAACCTCTCTTCAAAGAGTGATGTTTACAGTTTTGGAGTCATACTGTTGGAACTCTTAACTGGGCGTAAACCTGTCGATCATACACTGCCCCGAGGACAGCAAAGCCTTGTGACATGGGCAGCACCAAGGCTTAGTGAAGATAAGGTGAAGCAGTGTGTTGATGTTAGACTAAAGGGAGAGTACCCATCCAAAGCAGTTGCAAAGATGGCTGCTGTTGCTGCACTGTGTGTTCAATATGAAGCTGAGTTTCGACCAAATATGAGCATCATTGTCAAAGCTTTACAGCCTCTAATGAATAATACTCGTTCTTCTCAATCAAGGGAATCTCGCAACGTGTAA 1263 0.4212 MSFKALLLCLRTFFYNIFFFSSYPGQTQNHLYSFNISAFNFIIHFCGPQSLQFLTENRIMGCFGFCKENDSYTTADRGNFMQNNPTGNSSYHGRHTAVTIPRPINLQPISVPYITVDELKSVTDNFGTKSFLGEGAYGKVYRAMLKTGREVAIKKLDSSKQPDQEFLSQVSIVSRLKHENVVELLTYCVDGPFRALAYEYAPNGSLHDILHGRKGVKGSEPGQVLSWAQRVKVAVGAARGLEYLHEKAEVHIVHRYIKSSNILLFEDDMAKIADFDLSNQAPDAAARLHSTRVLGTFGYHAPEYAMTGNLSSKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWAAPRLSEDKVKQCVDVRLKGEYPSKAVAKMAAVAALCVQYEAEFRPNMSIIVKALQPLMNNTRSSQSRESRNV 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04143 420 CDD STKc_IRAK 132 405 - -
Vifa4g04143 420 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 67 409 - -
Vifa4g04143 420 FunFam pto-interacting protein 1 202 414 - -
Vifa4g04143 420 Gene3D Phosphorylase Kinase; domain 1 94 200 - -
Vifa4g04143 420 Pfam Protein tyrosine and serine/threonine kinase 130 402 IPR001245 GO:0004672|GO:0006468
Vifa4g04143 420 ProSiteProfiles Protein kinase domain profile. 126 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04143 420 Gene3D Transferase(Phosphotransferase) domain 1 201 420 - -
Vifa4g04143 420 ProSitePatterns Protein kinases ATP-binding region signature. 132 155 IPR017441 GO:0005524
Vifa4g04143 420 SUPERFAMILY Protein kinase-like (PK-like) 106 402 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04143 Vifa-Chr4 1319231596 1319233898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04143 107 403 Receptor kinase-like Gene Family AT4G02010 49.502 5.09e-89 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vifa4g04143 PK_Tyr_Ser-Thr 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04143 K13436 - gmx:547595 629.787