Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04139 ATGGAGTTAACTCCAAGAGGAAGAAATCAAGGTCATGTTGTGACTTTTGACAGAGATGCAGATTCATTTGTGGAGGAAGATAAAGAGCTTCAATCTAAATGGGCTGCTATAGAGAAACTACCAACTTTCAAAAGGATTAAAACTTCTTTTGTTGATGAAATCACTCAGGAGGAAAGTGGCAGTAGATGGCAAAGAAGTAGTAGTAAAAGGGTTGTTGATGTTACTAAGCTTGGAGCTGTTGATAAGCGGTTGTTTATTGATAAGCTCATCAAGCATATTGAGAATGATAATCTTAATTTGTTGCAGAAACTTAGAGAAAGGATGGAAAGAGTGAATGTGAAGTTACCTAGTGTGGAGGTAAGGTACAAGAACCTGAATGTAGAAGCGGAATGTGAGGTTGTTCAAGGGAAGCCACTTCCTACTCTATGGAATTCTTTTTCTAGCTTATTTTCAGGTTTAGTGAAGACTATATCATGTAGTTCTCAAGAAACCAAGTTGGGCATTCTCAAAGATGTCAGCGGCGTCATCAAGCCAGCAAGGCTTACTCTTCTTCTTGGTCCACCTAGCTGCGGGAAAACTACCTTACTAATGGCATTGGCTGGAAAACTAGATCAATCTCTTGAGGTTTCTGGAGAAATCTGTTACAACGGTCACAGGCTAGATGAATTTGTTCCTCAAAAAACATCAGCTTACATAAGCCAGTATGACCTTCACATTCCTGAGATGACAGTGAGGGAAACAATTGACTTCTCGGCACGTTGTCAGGGGGTCGGAAGCAGAGCTGATATTATGACTGAAATCACTAGGAAAGAAAAAGAACAAGGAATCTTCCCTGACCCGGATATTGATACTTATATGAAGGCTATTTCTGTTGAAGGACAAAGCGAAAATCTTCAAACGGAATATGTTTTAAAGATACTTGGATTGGATATCTGTGCTGACACTCTGGTCGGAGACGCACTAGATAGAGGCATTTCAGGTGGACAGAAGAAAAGGCTAACTACAGGAGAGATGATTGTAGGTCCCATAAAAGCACTTTTTATGGATGAAATATCAACTGGCTTAGACAGCTCCACTACTTTTCAAATAGTTACATGTCTCCAGCAATTGGTGCACATCAATGATGCAACAGCAGTGCTTTCACTCCTCCAACCAGCACCAGAAACCTTTGAGTTGTTTGATGATCTTATATTGATGGCAGAGGGGAAGATAGTATACCATGGCCCCTGCAGTCAAGCACTCCAGTTCTTTAAGGATTGCGGTTTCTGGTGCCCTGAAAGAAAAGGAGTGGCAGACTTTCTTCAAGAGGTAACCTCTAAGAAGGATCAAAGGCAATACTGGTACCGCACGGATATTCCTTACAGTTATGTTTCAGTGGATGAGTTCTCTCAAATTTTCAAAACAAGCTACTGGGGAAGAATGTTAGATGATGAGCTCTCACAACCATATGATAAATCTCAATCCCATGAAAGTTCTTTATCATATAGCAAGTACTCCTTAGGAAAATGGGATTTGTTTGAAGCTTGTATGAAGAGGGAGATTCTTCTCATGAAACGAAACTCGTTTATCTATATATTCAAAACTGTGCAGCTTACAATCACTGCAATCATAACAATGACGGTCTTTTTGCGCACACAACTTGACGTGGACTTGTTAGGATCAAACTATTTATTAGGTTCACTGTACTATACACTTGTACGCCTAATGACGAATGGAGTTGCCGAGTTGATAATGACTATTACTAGACTACCCGTTGTTTATAAGCAGAAAGCATTCTATCTCTATCCAGCTTGGGCTTACTGTCTTCCAGCTGCCATACTAAAGATTCCATTTTCAGTCCTTGATTCTCTTGTTTGGACATCAATAACATATTATGTTATAGGCTACAGCCCAGAAATAACAAGGTTCCTCCGCCAGTTCCTTTTGCTTATCGCTCTGCACATGTCATCAACCTCTATGTGTCGTTCCCTTGCTGCAGTTTTTAAAACTGATGTTGCAGCTACAACTGTTGGTTCTTTGGTCTTAGTACTCATGTTCTTGTTTGGAGGCTTTATTCTTCCTCGACCATCATTACCAAAGTGGTTGAGGTGGGGTTTTTGGCTTTCTCCCATGTCATATGGGGAAATAGGAATAACACTCAATGAATTTCTTGCTCCTCGCTGGCAAAAGATTCAAGAGGGAAACATCACCGTTGGAAGAGAGGTTCTCAAGAGTCGTGGTTTAGACTTTGATAGCAACTTTTTCTGGATATCAATTGCAGCATTACTTGGTTTCGCAGTAGTATTTGATATCCTATTTGTAGTAGCATTAACTTACTTAAAAGAGCCAAAGCAATCTCGAGCTTTAGTTTCGAAAAAGAGGCTGCCTCAACTAAAAGGAGGAGAAAGAAGCAATGAAGTGGAATTAAAAAATAAGTCAGTAGCAGTTGATATTACCCACACATCGAAGGAAGCTCAAAGCACAGGGAAAATGGTCTTGCCCTTTTTGCCACTGTCAATAGCATTTAAGGATGTCCAGTATTTTGTTGACACTCCTCCGGAGATGAAAAAGCATGGTTCGAATGAGAAAAATTTACAATTGCTCTGCGATATCACGGGAGCATTTAGGCCAGGAATCCTTACTGCTTTGATGGGAGTCAGTGGAGCAGGAAAGACAACACTCATGGACGTGCTTTCAGGAAGAAAAACTGGAGGTATCATTGAAGGAGATATAAGAATTGGAGGGTACCCTAAAGTTCAAAAGACATTTGCAAGAGTTTCAGGTTACTGTGAGCAGAACGACATACATTCTCCATATATAACAGTTGAAGAATCTGTTCGATACTCAGCTTGGTTGCGGTTGCCAAGCGAGATTGATTCAGCTACAAAAGGGAAATTTGTTGAAGAAGTCCTTGAAACAATTGAACTTGATGATATAAAGGATAACTTAGTTGGTATCGCTGGTCAAAGTGGCTTATCTACCGAGCAACGTAAAAGGCTAACTATAGCAGTAGAGCTTGTATCCAATCCTTCAATAATTTTTATGGATGAACCTACATCTGGTTTGGATGCCCGAGCTGCTGCTGTAGTTATGCGTGCAGTGAAGAATGTTGTTGGCACTGGTAGGACCACAGTTTGCACCATACATCAGCCAAGCATCGATATATTTGAAACTTTTGATGAGTTGATTCTAATGAAATCTGGAGGCAAGATCATTTATAATGGAATGCTAGGCCATCATTCAAATAGACTGATTGAATATTTTCAGAGTATACCGGGAGTTCCAAAGATCAAGGACAATTATAATCCTGCAACCTGGATGTTGGAAGCTACTTCTGCATCTGTAGAAGATGAACTTAAAATAGATTTTGCAAATATATATAAAGAGTCGCACCTTCACCGGGATACCCTTGAATTGGTGAGACAGATAAGTGAACCAGAGCCAGGTTCAAAAGACTTGCATTTCTCAACTCGCTTCCCACAAAATAACTTGGGGCAGTTTATGGCATGCCTATGGAAGCAACACTTGTCCTATTGGAGAAGTCCCGAGTACAATTTGATACGATTTGTGTTCATGATTGTTGCAGCAATAATATTTGGGGCGGTATTTTGGCAGAAAGGGAAGGAAATAAACACTCAGCAGGACTTGTTCAATGTGTTTGGATCAATGTATATTGCTGTAATTTTCTTGGGAATAAATTACTGTTCAACAATTCTACCATATGTGGCAACCGAGCGCTCCGTCCTGTATCGAGAAAAATTTGCAGGAATGTATTCTTCCATGGCTTATTCATTTGCACAGGTGGCCATTGAAATACCATATATCTTAGTGCAAGCAATTTTATATGTGGCTATCACCTATCCAATGATAGGTTTCCATTGGTCAGTTCCGAAGCTCTTTTGGTACTTCTACACGACATTCTGCACATTTCTATACTTTGTGTATCTTGGAATGCTGGTAATGTCATTAAGCTTAAATCTAGATTTAGCTTCAGTACTATCAACTGCAGTCTACACCATATTCAATCTCTTTTCTGGATTCCTCATGCCAGGACCTAAAATTCCTAAATGGTGGGTTTGGTGCTATTGGATTTGCCCTACAGCTTGGTCCTTGAATGGCCTATTAACTTCACAATATGGAGATATGGACAAGGAAATACTCATATTTGGAGACAAAAAATCAGTTGGTTCCTTTCTAAAGGATTACTATGGATTCAGACATGACAGATTAAGTGTTGTGGCTGCGGTGCTCATTGCTTACCCAATCATCTATGCATCCCTCTTTGCCTATTGTATAGGGAAAATAAATTACCAAAAGAGGTAG 4302 0.3996 MELTPRGRNQGHVVTFDRDADSFVEEDKELQSKWAAIEKLPTFKRIKTSFVDEITQEESGSRWQRSSSKRVVDVTKLGAVDKRLFIDKLIKHIENDNLNLLQKLRERMERVNVKLPSVEVRYKNLNVEAECEVVQGKPLPTLWNSFSSLFSGLVKTISCSSQETKLGILKDVSGVIKPARLTLLLGPPSCGKTTLLMALAGKLDQSLEVSGEICYNGHRLDEFVPQKTSAYISQYDLHIPEMTVRETIDFSARCQGVGSRADIMTEITRKEKEQGIFPDPDIDTYMKAISVEGQSENLQTEYVLKILGLDICADTLVGDALDRGISGGQKKRLTTGEMIVGPIKALFMDEISTGLDSSTTFQIVTCLQQLVHINDATAVLSLLQPAPETFELFDDLILMAEGKIVYHGPCSQALQFFKDCGFWCPERKGVADFLQEVTSKKDQRQYWYRTDIPYSYVSVDEFSQIFKTSYWGRMLDDELSQPYDKSQSHESSLSYSKYSLGKWDLFEACMKREILLMKRNSFIYIFKTVQLTITAIITMTVFLRTQLDVDLLGSNYLLGSLYYTLVRLMTNGVAELIMTITRLPVVYKQKAFYLYPAWAYCLPAAILKIPFSVLDSLVWTSITYYVIGYSPEITRFLRQFLLLIALHMSSTSMCRSLAAVFKTDVAATTVGSLVLVLMFLFGGFILPRPSLPKWLRWGFWLSPMSYGEIGITLNEFLAPRWQKIQEGNITVGREVLKSRGLDFDSNFFWISIAALLGFAVVFDILFVVALTYLKEPKQSRALVSKKRLPQLKGGERSNEVELKNKSVAVDITHTSKEAQSTGKMVLPFLPLSIAFKDVQYFVDTPPEMKKHGSNEKNLQLLCDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQKTFARVSGYCEQNDIHSPYITVEESVRYSAWLRLPSEIDSATKGKFVEEVLETIELDDIKDNLVGIAGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAVVMRAVKNVVGTGRTTVCTIHQPSIDIFETFDELILMKSGGKIIYNGMLGHHSNRLIEYFQSIPGVPKIKDNYNPATWMLEATSASVEDELKIDFANIYKESHLHRDTLELVRQISEPEPGSKDLHFSTRFPQNNLGQFMACLWKQHLSYWRSPEYNLIRFVFMIVAAIIFGAVFWQKGKEINTQQDLFNVFGSMYIAVIFLGINYCSTILPYVATERSVLYREKFAGMYSSMAYSFAQVAIEIPYILVQAILYVAITYPMIGFHWSVPKLFWYFYTTFCTFLYFVYLGMLVMSLSLNLDLASVLSTAVYTIFNLFSGFLMPGPKIPKWWVWCYWICPTAWSLNGLLTSQYGDMDKEILIFGDKKSVGSFLKDYYGFRHDRLSVVAAVLIAYPIIYASLFAYCIGKINYQKR 1433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04139 1433 Pfam ABC transporter 863 1013 IPR003439 GO:0005524
Vifa4g04139 1433 Coils Coil 101 121 - -
Vifa4g04139 1433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 426 IPR027417 -
Vifa4g04139 1433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 857 1068 IPR027417 -
Vifa4g04139 1433 Pfam Plant PDR ABC transporter associated 721 783 IPR013581 -
Vifa4g04139 1433 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 154 426 IPR003439 GO:0005524
Vifa4g04139 1433 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 21 1433 - -
Vifa4g04139 1433 SMART AAA_5 178 411 IPR003593 GO:0016887
Vifa4g04139 1433 SMART AAA_5 870 1062 IPR003593 GO:0016887
Vifa4g04139 1433 Gene3D - 847 1079 IPR027417 -
Vifa4g04139 1433 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 833 1086 IPR003439 GO:0005524
Vifa4g04139 1433 Pfam ABC transporter 169 351 IPR003439 GO:0005524
Vifa4g04139 1433 CDD ABCG_PDR_domain2 830 1068 IPR034003 -
Vifa4g04139 1433 FunFam ABC transporter G family member 34 156 460 - -
Vifa4g04139 1433 Pfam ABC-2 type transporter 1042 1104 IPR043926 GO:0140359
Vifa4g04139 1433 Pfam ABC-2 type transporter 384 437 IPR043926 GO:0140359
Vifa4g04139 1433 FunFam ABC transporter G family member 34 847 1079 - -
Vifa4g04139 1433 Pfam ABC-transporter N-terminal 79 144 IPR029481 -
Vifa4g04139 1433 Gene3D - 153 419 IPR027417 -
Vifa4g04139 1433 Pfam ABC-2 type transporter 1159 1371 IPR013525 GO:0016020|GO:0140359
Vifa4g04139 1433 Pfam ABC-2 type transporter 505 716 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04139 Vifa-Chr4 1318331279 1318339274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04139 857 1045 Calmodulin-binding Proteins AT2G36910 28.431 6.56e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04139 K08711 - gmx:100779615 2489.92