Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04121 ATGAACATAGGCGTCAAGGTTGAGGTTTCACCGAAATCTCCTTCTCCTTCTCTCCCAATCTTTGGCCATGCTGTGAGTTGCTCTGAGATCATGAAAGATTCGATATTGGAGACCCCTGCGAAGATGTTTATCCCAAATGTGCGTTCTGGTAGCTATGCTGATATTGGACCACGGGGATCGATGGATGATGAACATATTCAGATAGATGATCTAGCTTGCCACCTTGGGTTTGTGTTCAAGTACCCGATACCGAGTGCGTTTTATGCGGTTTTTGATGGGCATGGAGGGCCTGAGGCTGCTGCGTTTGTTAAGAGGAATGCTATGAGATTGTTTTTTGAAGATGCTGATATGCTACAATCGTATGATACTGATGCCTTTTTTCTAGAGAAGTTGGAGAGTGTTAGTAGTTCATGTGGGACTACAGCACTGACTGCCCTTGTGCTTGGAAGGCATTTGCTTGTTGCGAATGCTGGTGACTGTCGAGCAGTACTTTGCAAGAGAGGTGCAGCTGTTGAGATGTCTCAAGATCACAGACCGAGTTATTTACCAGAAAGAAGGAGAGTGGAGGAGTTAGGCGGATTCATTGATGACGGATATCTCAATGGTTATCTCTCGGTAACTCGTGCCCTTGGGGATTGGGACTTGAAATTTCCACTTGGTGCTGCATCTCCTCTAATTGCTGAACCTGATGTTCAACTGGTTACATTGACAGAAGAGGACGAGTTCTTGATCATTGCGTGTGATGGGATATGGGATGTAATATCTAGCCAAGTTGCAGTTAGTCTTGTTCGTCGTGGACTAAGAAGGCACAACGACCCACAGCAAAGTGCCAGAGATCTAGTCAAGGAAGCATTGCGCCTAAATACATCAGATAATCTCACTGTGGTTGTTATATGTCTGTCACCTGTTGAAAGCTTTGCTGAATCATGTCCGCCACAGAGACGAAGATTCAAAGCTTGCAGTATTTCTGAAGAGTCTCGTAATAGATTGAAGAGCTTAATAGAGGGAAATTGA 1014 0.4477 MNIGVKVEVSPKSPSPSLPIFGHAVSCSEIMKDSILETPAKMFIPNVRSGSYADIGPRGSMDDEHIQIDDLACHLGFVFKYPIPSAFYAVFDGHGGPEAAAFVKRNAMRLFFEDADMLQSYDTDAFFLEKLESVSSSCGTTALTALVLGRHLLVANAGDCRAVLCKRGAAVEMSQDHRPSYLPERRRVEELGGFIDDGYLNGYLSVTRALGDWDLKFPLGAASPLIAEPDVQLVTLTEEDEFLIIACDGIWDVISSQVAVSLVRRGLRRHNDPQQSARDLVKEALRLNTSDNLTVVVICLSPVESFAESCPPQRRRFKACSISEESRNRLKSLIEGN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04121 337 FunFam Probable protein phosphatase 2C 22 32 303 - -
Vifa4g04121 337 Pfam Protein phosphatase 2C 58 292 IPR001932 -
Vifa4g04121 337 CDD PP2Cc 47 300 IPR001932 -
Vifa4g04121 337 PANTHER PROTEIN PHOSPHATASE 2C 50 298 IPR015655 GO:0004722|GO:0006470
Vifa4g04121 337 ProSiteProfiles PPM-type phosphatase domain profile. 48 300 IPR001932 -
Vifa4g04121 337 Gene3D - 35 304 IPR036457 -
Vifa4g04121 337 SUPERFAMILY PP2C-like 41 302 IPR036457 -
Vifa4g04121 337 ProSitePatterns PPM-type phosphatase domain signature. 87 95 IPR000222 GO:0043169
Vifa4g04121 337 SMART PP2C_SIG_2 63 300 IPR001932 -
Vifa4g04121 337 SMART PP2C_4 38 298 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04121 Vifa-Chr4 1312501047 1312502689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04121 5 336 PP2C-type Phosphatase Gene Family AT1G48040 56.534 3.94e-132 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04121 K14803 - gmx:100775577 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04121 4 1312501047 1312502689 Vifa4g04121 4 1312501047 1312502689 ECH
Vifa4g04121 4 1312501047 1312502689 Vifa1g09554 1 1530834931 1530836740 PCT