Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04118 ATGAATTTTTTTCTCTTTCTCCTCAAATTCCCATGCTTATTTCTTCTAACTACCATCACTTCTCCCTTGTTCATCAAAGCATCTCAAATAAATGCTGAAACCTATGAATCTGATAGAATAACTGATTTACCAGAACAACCTTCAACACCATCAATCTCACACTTTTCAGGTTACATCACTGTCAATGAAGATCATGGAAGGGCCCTTTTCTATTGGTTCTTTGAAGCTCAGTCTCAACCCTCTAATAAGCCTCTTCTTCTTTGGCTCAATGGAGGACCTGGATGCTCCTCGATTGGATATGGTGCTGTTGTTGAGATAGGACCTCTTTTAGTCGACAAAAATGGCGAAAGACTATTATTCAACCCATACTCTTGGAATCAAGAAGCAAATTTGTTATTTGTGGAATCTCCAGTTGGAGTTGGATTTTCTTACACAAACACTTCTTCTGATCTCACCATTTTAGAGGATCATTTTGTTGCTGAAGATACCTACAATTTCTTGGTGAATTGGCTACAAAAATTTCCACAATATAACTCCAGGGACTTTTTCATCGCCGGAGAAAGCTACGCAGGCCACTATATTCCTCAGCTTGCAGAGTTAATCTTTGACAGAAACAAAGATAGAAACAGATACTCCTTTATTAATCTTAAAGGTTTTATTGTAGGGAATCCAGAAACTGATAATTACTATGACTCAAAAGGCCTTCTACAATTTGCATGGAGTCATGCAGTTATATCAGATGAGCAATATGAGAAAGCAAAACAAGTTTGTGATTTCAAACAATCTATTTGGTCTAATGAATGCAATCTGGCCATGAATGAACTCTATAATGATTACTCAGAAATTGACATATACAACGTTTACGCACCAGCATGTCGATTAAATACCACATCCTCAGTGACAAGTAATGATTATAGGTTCAAGAAAATGAGAATTTTTGGAGGCTATGATCCTTGTTATTCCTCATATGCAGAAGAATATTTCAATAGGGTAGATGTTCAATCATCTTTACATACAAATACTAAAACAGAAAACAACAGTAACACATCATGGAAGGTTTGCAATGCTTCCATATTAAGGACATACAACTTCTCTGTTTTTTCTGTCCTACCAATCTACACAAAACTCATTAAGGGTGGTGACCTTAAGATATGGATTTACAGTGGTGATGCAGATGGTAGAATACCTGTGATGGGAACACGTTATTGTATTGAAGCTCTTGAATTACCTCTAAAGTCTACTTGGAAACCTTGGTACCATAATGATCAGGTTGGAGGAAGGATAGTGGAGTATGAAGGATTGACATACGTGACAATAAGAGGAGCTGGACATTTAGTGCCTCTAAACAAACCAACTGAGGCTCTATCCCTTATTCATTCTTTTCTAACGGGAGAACATCTCCCTACTACACGTTAA 1416 0.3708 MNFFLFLLKFPCLFLLTTITSPLFIKASQINAETYESDRITDLPEQPSTPSISHFSGYITVNEDHGRALFYWFFEAQSQPSNKPLLLWLNGGPGCSSIGYGAVVEIGPLLVDKNGERLLFNPYSWNQEANLLFVESPVGVGFSYTNTSSDLTILEDHFVAEDTYNFLVNWLQKFPQYNSRDFFIAGESYAGHYIPQLAELIFDRNKDRNRYSFINLKGFIVGNPETDNYYDSKGLLQFAWSHAVISDEQYEKAKQVCDFKQSIWSNECNLAMNELYNDYSEIDIYNVYAPACRLNTTSSVTSNDYRFKKMRIFGGYDPCYSSYAEEYFNRVDVQSSLHTNTKTENNSNTSWKVCNASILRTYNFSVFSVLPIYTKLIKGGDLKIWIYSGDADGRIPVMGTRYCIEALELPLKSTWKPWYHNDQVGGRIVEYEGLTYVTIRGAGHLVPLNKPTEALSLIHSFLTGEHLPTTR 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04118 471 Gene3D - 319 358 - -
Vifa4g04118 471 FunFam Carboxypeptidase 369 464 - -
Vifa4g04118 471 SUPERFAMILY alpha/beta-Hydrolases 36 468 IPR029058 -
Vifa4g04118 471 ProSitePatterns Serine carboxypeptidases, serine active site. 184 191 IPR018202 GO:0004185
Vifa4g04118 471 Gene3D alpha/beta hydrolase 34 294 IPR029058 -
Vifa4g04118 471 FunFam Carboxypeptidase 34 294 - -
Vifa4g04118 471 Pfam Serine carboxypeptidase 44 463 IPR001563 GO:0004185|GO:0006508
Vifa4g04118 471 ProSitePatterns Serine carboxypeptidases, histidine active site. 434 451 IPR033124 GO:0004185
Vifa4g04118 471 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 40 451 IPR001563 GO:0004185|GO:0006508
Vifa4g04118 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 434 447 IPR001563 GO:0004185|GO:0006508
Vifa4g04118 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 133 IPR001563 GO:0004185|GO:0006508
Vifa4g04118 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 134 144 IPR001563 GO:0004185|GO:0006508
Vifa4g04118 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 195 IPR001563 GO:0004185|GO:0006508
Vifa4g04118 471 Gene3D - 369 464 - -
Vifa4g04118 471 FunFam Carboxypeptidase 316 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04118 Vifa-Chr4 1310965943 1310968448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04118 320 467 Calmodulin-binding Proteins AT2G22960 29.530 1.27e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04118 K16297 - gmx:100815141 784.252