Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04112 ATGGATGTAAAAGGAAGAAACAACAACAACAACGTTATGAGTTGTGAAGATGATGAGATGGACCTTAGAAGAGGTCCATGGACCGTAGATGAGGACCTAACCCTCATGAATTACATTGCTACTCATGGTGAAGGTCGTTGGAATACCCTAGCCAACTTAGCAGGTCTTAAACGATCGGGCAAGAGTTGTCGATTGAGGTGGCTAAACTATCTTCGTCCCGATGTTAGACGTGGAAATATTACACTCGAGGAACAACTTTTGATTCTTGAACTTCATGCTCGTTGGGGAAATCGATGGTCGAAAATAGCTCAATTTCTACCGGGCAGAACGGATAATGAAATTAAGAACTATTGGAGAACTCGTGTACAAAAGTTAGCTAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAAGACACCATGCGTTACCTTTGGATGCCAAGGCTAGTTGAGCGCATTCAAGCGGCATCGGCCGCCACTTCCACCACCACCAAGACGACCGTCATCAATACTACATCCAACTACATCAACAATAATAATGGCCTAAAAGTTACAATGGGTTCAACTCCAACAATTACTATGAACAATGAATTTGTGAGTTCACAACCACATATAACACAAAGTTATACCCTAGAGAATAGTAACACAACCACATCATCAGATTCATTTGAGAATCATAAGGTCTCAACAATATCAGATTTGGGTGATAATAATTATAATTATTATTACACAAATGTTGATAATAAGAATAACCCTAACTCTAATTTAGATTATTTTCAACCTTCTCATCAACCTAGCTTCTCGGATTGCATCACAAGCCCATCTGGATTATTCTCTCAAGAATTAGCCGATTTTCAATTCATGGAGCCAAACACTCCATGGATACAAAATGAGAACTCATCAGATATTTTTTGGAATGATGAAACTATGTTGTTTTTAGAGCAACAACTCATGAATGATACCATGTAA 972 0.3848 MDVKGRNNNNNVMSCEDDEMDLRRGPWTVDEDLTLMNYIATHGEGRWNTLANLAGLKRSGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHARWGNRWSKIAQFLPGRTDNEIKNYWRTRVQKLAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAASAATSTTTKTTVINTTSNYINNNNGLKVTMGSTPTITMNNEFVSSQPHITQSYTLENSNTTTSSDSFENHKVSTISDLGDNNYNYYYTNVDNKNNPNSNLDYFQPSHQPSFSDCITSPSGLFSQELADFQFMEPNTPWIQNENSSDIFWNDETMLFLEQQLMNDTM 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04112 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Vifa4g04112 323 Gene3D - 81 144 - -
Vifa4g04112 323 SUPERFAMILY Homeodomain-like 21 118 IPR009057 -
Vifa4g04112 323 Gene3D - 24 76 - -
Vifa4g04112 323 SMART sant 76 124 IPR001005 -
Vifa4g04112 323 SMART sant 23 73 IPR001005 -
Vifa4g04112 323 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Vifa4g04112 323 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Vifa4g04112 323 FunFam Myb transcription factor 24 76 - -
Vifa4g04112 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 71 IPR017930 -
Vifa4g04112 323 CDD SANT 26 71 IPR001005 -
Vifa4g04112 323 CDD SANT 92 120 IPR001005 -
Vifa4g04112 323 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Vifa4g04112 323 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Vifa4g04112 323 FunFam MYB transcription factor 81 144 - -
Vifa4g04112 323 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 19 215 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04112 Vifa-Chr4 1309644760 1309646294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04112 1 314 MYB Transcription Factor Family AT3G06490 51.198 2.67e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa4g04112 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04112 K09422 - gmx:100791349 405.986