Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04110 ATGGCACATTTCTCAACTAACCTCAAAGTTCTTACCATTCATCATGACACCATTCTTCTTGATCAAATTCAGCAAATGTGTGACCGCTGTCATTATCTACTAACCAAATGCACTTCACCTTCTGATGCTCTTCATCTTCTTGCGCAAAGAAATAATTATTTTGATATCATGTTGATTGATGTTGGAATGCCAAGCATGGAGTCCTATGAGTTTCTTAGATATATAACCCTACAACACAACATCCCTGTCATTGTCATGTCTTCTGATACAACAAATACTTCTGTCGTCATGGAGTCTATAATTCATGGTGCTAGTGATTACTGGTTTCAACCTTTAAATGAAAAACTATTCAAAACTATGTGGCAGCATGCTGCCAGAAAAAGTTTAACTGAAAATAAAGAACATGATGTTCTTGGATTCTTGAAGGCTCAAAGTCACAAAGAACCTGAAGTTGTTGGAATCATGAAAGTTCAAAGCCCTAAAGAACATGAAGTTGTTGGATTCTTGGAGGCTCCTCAGCATGAAAGAAAACGGGAGAGAGAAGATGATAATCCTCCAAAAAAGAGTCGGTTATCATGGACGCCGCAATTGCACCAACAGTTTGTTAATGCTGTAAACCAACTTGGCTTGGATGAGGCAAAACCAAGAAAGATTCTGAAAATAATGGATGTTTGTGGTTTAACAACAGCTCAGGTTGCAAGTCATTTGCAGAAGTATAGAGACTGTTTCAAGAGAGCACCTTGTGGAAAAAAGTCAAAGAAAATTCCAAGAATTGACACTCCAACGTCAGAAACTGAACATGCTATCTCAAAGGACCAAATTTCTCAATTGAACTCTTTGAATAACAGTAATATTGAAACACAACAACATTTAACTGATGTTGCCAATTATCAAGTTTCCGACACTGGTTACAATTATGAAACACAAAAGCATTCAACAGAAGTTGGCGATAATCAAGTCTCCGACATTATGAACAACGATTTTCCTGATCTATCATCTGACTGGTTCTTAGATTTAGATGATGAGTTATTATCATTATTATTCTGA 1047 0.3658 MAHFSTNLKVLTIHHDTILLDQIQQMCDRCHYLLTKCTSPSDALHLLAQRNNYFDIMLIDVGMPSMESYEFLRYITLQHNIPVIVMSSDTTNTSVVMESIIHGASDYWFQPLNEKLFKTMWQHAARKSLTENKEHDVLGFLKAQSHKEPEVVGIMKVQSPKEHEVVGFLEAPQHERKREREDDNPPKKSRLSWTPQLHQQFVNAVNQLGLDEAKPRKILKIMDVCGLTTAQVASHLQKYRDCFKRAPCGKKSKKIPRIDTPTSETEHAISKDQISQLNSLNNSNIETQQHLTDVANYQVSDTGYNYETQKHSTEVGDNQVSDIMNNDFPDLSSDWFLDLDDELLSLLF 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04110 348 SMART REC_2 8 120 IPR001789 GO:0000160
Vifa4g04110 348 MobiDBLite consensus disorder prediction 168 188 - -
Vifa4g04110 348 Gene3D - 3 133 - -
Vifa4g04110 348 Pfam Response regulator receiver domain 10 116 IPR001789 GO:0000160
Vifa4g04110 348 CDD REC_typeB_ARR-like 10 125 - -
Vifa4g04110 348 SUPERFAMILY CheY-like 7 134 IPR011006 -
Vifa4g04110 348 ProSiteProfiles Response regulatory domain profile. 9 125 IPR001789 GO:0000160
Vifa4g04110 348 Pfam Myb-like DNA-binding domain 191 240 IPR001005 -
Vifa4g04110 348 FunFam Two-component response regulator 184 246 - -
Vifa4g04110 348 Gene3D - 186 246 - -
Vifa4g04110 348 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 278 IPR045279 GO:0009736
Vifa4g04110 348 NCBIfam myb-like DNA-binding domain, SHAQKYF class 188 241 IPR006447 GO:0003677
Vifa4g04110 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 244 IPR017930 -
Vifa4g04110 348 SUPERFAMILY Homeodomain-like 186 245 IPR009057 -
Vifa4g04110 348 MobiDBLite consensus disorder prediction 168 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04110 Vifa-Chr4 1307675686 1307676920 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04110 4 226 Response Regulator Gene Family AT4G16110 36.207 2.19e-39 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vifa4g04110 Response_reg 3e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04110 - K14491 psat:127104760 368.622