Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04097 ATGATGGTTGGATATACGAAGGAAAATAGCAGCCTTGTGGTGATTGGGCTGAGTGTGCATACTACACCGGTGGAGTTGCGTGAGAAACTTGCTATACCAGAAGCTGAATGGCCAAGAGCCATTGGTGAGCTTTGTGGTTTGAATCATATTGAAGAAGCAGCTGTTCTTAGTACGTGTAACAGAATGGAGATTTATGTTGTTGCACTTTCTCAGCATCGTGGTATCAAAGAAGTCACTGAATGGATGTCAAGTGATGAGTTTATGAACGATGTTCCTACCTATTTTCTCTGTCCCATATCATTAGAAATCATGAAGGATCCGGTAACAGTTTCAACCGGCATAACCTACGACAGAGAATGCATCGAAAAATGGCTATTCTCAAAGAACAACAAAACATGTCCTATCACAAAACAACTGCTCTCAGATTACACTCATCTAACACCAAACCACACACTTCGAAGACTCATTCAAGCATGGTGTACACTTAACGCTTCACAAGGAATCCAAAGGATTCCAACTCCAAAACCACCTATCAACAAAACCCAAATCACCAAACTCATCAAACAAGCTTCTCAGTCAAATCTCACCATTCAGATTAAATGTCTCAAAACACTTAGATCATTTGCTTCTGGTAGTGAAACAAACAAACGTTGCATGGAAGATGTTGGTGTTGTTGACTTCTTAGCTTCTACTGTGGTAAACAATAGTTGCAACATCGATTCCGCATCTTTATTATTGTCAGAGACTAATGTTAATCTGGTTGATGAAGCATTAAGCATACTTCATAACCTTCATGTATCTGAAGCTGGATTGAAGAATCTACTAGCTTTCAAAAACGGTCAATTTATCGAGTCCTTAACAAAAGTTTTACAGAAAGGTTTCTTTGAATCAAGAGCTTATGCAGTTTTCTTGCTTAAATCTATGACAGAAGTAGCTGAACCAGTGCAGTTACTTCATCAAAAAACTGATTTATTCGTGGAACTGGTGCAAGTTTTGAAGGATCAAATATCACAAAAGGTATCAAAAGCAGCCCTTCAGACACTAATTATCCTTTGTCCATGTGGAAGAAACAGAATCAAAGGTGTTGAAGCAGGAACAGTTCCTGTCTTAATAGAGCTTCTGTTAGAGAATTGCAAAGACAGAAAACCAAATGAAATGATGTTGGTTTTATTGGAATGTCTCTGTCAGTGTGCAGAAGGAAGAGCTGAACTTTTGAGACATGGTGCAGGAATGGCTGTTGTATCTGCGATCCGCGATGAAATAAACGATGTCGAGATAATCTACAAACCGCTTTCTGATATGCTCGAATGCGTAGGCGAAGCGGATGTAGTTTTCACAAGCACGACATCAGAGAATCCTTTGATTTTAAAACAACATGTTAAGGAACTTCCTTTCGCAAGCGAAGAAATGGGACGAAAGCGCCTCTTCGTCGATATTTCTGTTCTGAGGAACGTAGGTTCGTGCGTCGATGACCTCGAATCAGTCAAAGTTTACAATGTCGACAACCTTAAAGAGGTAGTGGCTGCTAACGAAGAGGACAAACTAAGAAAAGAAATGGAAGCACAAGTGATCATCGGCGAAGAATCGGGCCAATTCGAAGCATGGAGAGACTCGTTAGAAACTGTTCCTACTATCAAGAAACTGAGAGCTTATGCTGAAAGGTTAAGGATTGCTGAGGTTGAGAAATGTTTAGGTAAAATGAGTGATGAGGATATAAATAAGAAGACACAAAAAGCAGTGGATGATCTTGGTAGAGGTATAGTGAATAAAATGCTTCATGGTCCAATGCAACATTTGAGATGTGATGGGAGTGATAGTAGGACTTTGAGTGAAACACTTGAGAATATGCATGCCTTGAATAGAATGTTTGGTCTTGAAACTGAGGTTTCTGTTTTGGAGCAGAAGATTAGAGCTAAAGTGGAGCAAAAACCATAG 1935 0.3964 MMVGYTKENSSLVVIGLSVHTTPVELREKLAIPEAEWPRAIGELCGLNHIEEAAVLSTCNRMEIYVVALSQHRGIKEVTEWMSSDEFMNDVPTYFLCPISLEIMKDPVTVSTGITYDRECIEKWLFSKNNKTCPITKQLLSDYTHLTPNHTLRRLIQAWCTLNASQGIQRIPTPKPPINKTQITKLIKQASQSNLTIQIKCLKTLRSFASGSETNKRCMEDVGVVDFLASTVVNNSCNIDSASLLLSETNVNLVDEALSILHNLHVSEAGLKNLLAFKNGQFIESLTKVLQKGFFESRAYAVFLLKSMTEVAEPVQLLHQKTDLFVELVQVLKDQISQKVSKAALQTLIILCPCGRNRIKGVEAGTVPVLIELLLENCKDRKPNEMMLVLLECLCQCAEGRAELLRHGAGMAVVSAIRDEINDVEIIYKPLSDMLECVGEADVVFTSTTSENPLILKQHVKELPFASEEMGRKRLFVDISVLRNVGSCVDDLESVKVYNVDNLKEVVAANEEDKLRKEMEAQVIIGEESGQFEAWRDSLETVPTIKKLRAYAERLRIAEVEKCLGKMSDEDINKKTQKAVDDLGRGIVNKMLHGPMQHLRCDGSDSRTLSETLENMHALNRMFGLETEVSVLEQKIRAKVEQKP 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04097 644 Gene3D - 399 507 - -
Vifa4g04097 644 Gene3D - 10 97 IPR036343 GO:0008883|GO:0033014|GO:0050661
Vifa4g04097 644 SMART Ubox_2 94 159 IPR003613 GO:0004842|GO:0016567
Vifa4g04097 644 Pfam Shikimate / quinate 5-dehydrogenase 414 506 IPR006151 -
Vifa4g04097 644 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 414 642 - -
Vifa4g04097 644 CDD RING-Ubox_PUB 92 142 IPR045210 -
Vifa4g04097 644 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 520 606 IPR036453 GO:0008883|GO:0033014|GO:0050661
Vifa4g04097 644 Hamap Glutamyl-tRNA reductase [hemA]. 11 623 IPR000343 GO:0008883|GO:0033014|GO:0050661
Vifa4g04097 644 Gene3D - 175 360 IPR011989 -
Vifa4g04097 644 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 15 85 IPR015895 GO:0008883|GO:0033014|GO:0050661
Vifa4g04097 644 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 11 71 IPR036343 GO:0008883|GO:0033014|GO:0050661
Vifa4g04097 644 SUPERFAMILY ARM repeat 182 423 IPR016024 -
Vifa4g04097 644 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 520 625 IPR015896 GO:0008883|GO:0033014|GO:0050661
Vifa4g04097 644 Pfam U-box domain 91 161 IPR003613 GO:0004842|GO:0016567
Vifa4g04097 644 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 148 IPR013083 -
Vifa4g04097 644 ProSiteProfiles U-box domain profile. 90 166 IPR003613 GO:0004842|GO:0016567
Vifa4g04097 644 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 418 512 IPR036291 -
Vifa4g04097 644 SUPERFAMILY RING/U-box 83 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04097 Vifa-Chr4 1304835865 1304839719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04097 90 415 U-box Gene Family AT3G52450 53.179 5.93e-118 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04097 - - mtr:25499491 553.132