Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04094 ATGTGCAGCATGCCATCGCATACTAGATTATGTGGAGGGTGCAACAAGGAGATACTCTATGGGAATTGTTTGGGAGTCGAACAGAGTTATTTTCATCCAGATTGCTTTCGGTGTCACTCTTGCCATCATCCTATTACCGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAATATTGTTTTAAAGAGTTAAGCCATCCTAAATGTGAAGTTTGTCATCATTATATACCTATAAATGGTTCTGGTTTGATTGAGTATAGGTGTCACCCTTATTGGAACCAAAAGTACTGTCCATCTCATGAATATGACAATACTGCTCGCTGTTGTAGCTGCGAAAGATTAGAGTCTCGTGGAGAGAGATACTTTAGATTGGATGATGGACGAATTCTGTGCTTTGAGTGCATGGAATCTGCTATAACAGATACCGGTGAATGTCAACCTCTTTATCATGCTATTCGAGACTATTATGAAGGAATGCATATGAGAATTGATCAACAAATCCCGATGCTTCTAGTTGGGAGAGAAGCACTTAATGAAGCCATTGTTGGAGAAAAGAATGGTTACCATCATGTTCCGGAAACAAGAGGCTTATGCCTTTCAGAAGAGCAAACTGTCACCAGTGTATGA 633 0.4028 MCSMPSHTRLCGGCNKEILYGNCLGVEQSYFHPDCFRCHSCHHPITEREFSLSGKHPYHKYCFKELSHPKCEVCHHYIPINGSGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRGERYFRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMHMRIDQQIPMLLVGREALNEAIVGEKNGYHHVPETRGLCLSEEQTVTSV 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04094 210 CDD LIM_DA1 11 63 - -
Vifa4g04094 210 Pfam Protein DA1 160 210 IPR022087 -
Vifa4g04094 210 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Vifa4g04094 210 Gene3D Cysteine Rich Protein 5 68 - -
Vifa4g04094 210 SMART lim_4 10 62 IPR001781 -
Vifa4g04094 210 Pfam LIM domain 11 64 IPR001781 -
Vifa4g04094 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 102 - -
Vifa4g04094 210 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Vifa4g04094 210 PANTHER PROTEIN DA1-RELATED 2 5 210 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04094 Vifa-Chr4 1304757114 1304758316 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa4g04094 LIM 2e-08 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04094 - - gmx:100793901 423.705