Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04068 ATGAACCACAACCGTCGAAGTCCCGGCGGTTTCCGCTCCGTCCCTGCCCCTCTCCATCGGAATTTTGATAGTCCACAGCGTTGGTCTCCGGGTAGGGTTGGGGGATTTCGTCCACCAGGTGGTGGAGAGGGGTTTAGGCCGATGGGAGGTGAAGGTGCTGGAGATTTTGGATTTAATAATCACCAGCCGGCGCCGGCGCCGATGTCTGGACAGAAACGAGGGTTTCCTTTCTCTGGACGCGGAGGTTCGCCAGATCATTTTGATGGTGGAAATTTTGCCAAACTTTTTGTTGGGTCTGTTCCTCGAACAGCAACTGAGGAAGATATCTGTCCTTTATTTGAGGAACACGGGAATGTGGTTGAGGTCGCCCTGATCAAAGATAGAAAGACAGGACAGCGTCAAGGTTGTTGTTTTATAAAGTATGCTACTTCAGAGGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAACATACTCTACCCGGCGGTGCTGGTCCCATCCAAGTGCGGTATGCTGATGGCGAACGGGAACGCCTTGGTGCAGTTGAGTACAAACTATTTGTGGGCTCTCTGAATAAACAGGCTCTCGTAAAGGAAGTTGAGGAAGTTTTCTCAAAATATGGGCGGGTTGAAGATGTTTATCTTATGCGTGATGACAAGAAGCAGAGTCGTGGATGTGGTTTTGTCAAATATTCTCACAGAGATATGGCACTGGCAGCTATTAATGGACTTAATGGAATATATACGATGAGAGGTTGTGATCAACCGCTGATTGTTCGGTTTGCTGATCCTAAGAGACCACGCCAAGGAGATTCCAGGGGTCCTGCATTTGGGGCTGCAGGATTTGGTCCTAGATTGGATGCACCTGGCACTAGATTTCCATCAAATAATTCTGACCCTATGGGTGATCGTATGCCTCCCCCTAATGCTTGGCGTCCAACCCATCAACCAAATACTGGTACATCCTTCAATGCTGGTTTTCACGGCATGGGGCCTCCATTGATGCCAAGATCTGGCGACATGACATTGCCTATAAGTGCAGGTGGTCCTATGACTGGCATGGGAGCCTCCATAGATGTCCGTTTTCAAGCTCAGTCTCCGTCAGCAATGCCACAACAGAATTTCAATCAGCCTCGACCGCAAATTCCACCGGTCAATCAACAAATGCCTCCGCCACAGAAACCTATTCAATCATCTCAGGAGTTTCCACCTTCACACCAGTTATATCCTCAAGCTCCGATGCCCTATTCACAAACATCAACACTTCCATCCCTCAGGCAACATGTTCAGCCACAACCTCTCTCTGCTGGTCCGCAGGGACTGGGCATTAGTGCACAGTTTTCAGCTCCTCAACCTCAAGCTAATCAGAGTGTTTTGTCTGCTACGTTTCCTCAGACCTCTCTTGATACTAGCATCCAATCTAATACAGCATTGACTACCCCAAGTCGACAGCAAATTCCTCCCTCTATGCAGCAGCATCAGCAGCCACTTCAACCTCTTCAGCAATCCCCTTCTCAGTTAGCCCAGATGGTGTCACAACAAACACAGACTTTACAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATCCAGCCATCCAGTCAAGCATTGACATTGCCGCATCATGCAGAAGCTACTAAAACACAGTCTCAATGGGGCGGGCCTGTTTCACAGGCAGCAACAGGCACTCATGTGGCCGCACCTGCTGCAGCTGCTCCTTCATCAACAGCTGCTACTTCTTCTGTACAAGCAATAAGCCAGAACACAACTCTTCCAAAATGTAATTGGACAGAGCATCTTTCTCCTGAAGGCTTCAAATACTACTACAATAGTGTGACTGGGGAAAGTCGGTGGGAGAAACCCGAAGAGTTGACATTGTTTGAACAGCAAAAGCAACAGCCCAGCCAGTCTGTTCAGCAGTCTCAAATTCAGTCACAGCCTTCAATACCACCCACCCAACAAATTGTACAAAGCCAACAGGTTCATCCTCAAAGTCATTTCCGAGAACAAGCTCTCCACCATCAACAAATACAGCAACCTTCCTCTTTCCAGGTATATGGAGTTAGAGGTCATCAAAATGTTCAGGAACTTGGTTATAAACAGATGCCATTTGTTTCTGCTGGTGATCCTGGACGTTATTCACAGGGTATTAATACTACACAAGAGCGAATGTGGAAAAACAGACCTGCAGGTTTCAGTCCTTTGCCAAACTCATCTACCCCCAGTTTGAACACATGCACACGCACAAAAACACAAACTAAACGGGCTTTAGTCTTTTAA 2307 0.4759 MNHNRRSPGGFRSVPAPLHRNFDSPQRWSPGRVGGFRPPGGGEGFRPMGGEGAGDFGFNNHQPAPAPMSGQKRGFPFSGRGGSPDHFDGGNFAKLFVGSVPRTATEEDICPLFEEHGNVVEVALIKDRKTGQRQGCCFIKYATSEEADQAIRALHNQHTLPGGAGPIQVRYADGERERLGAVEYKLFVGSLNKQALVKEVEEVFSKYGRVEDVYLMRDDKKQSRGCGFVKYSHRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPAFGAAGFGPRLDAPGTRFPSNNSDPMGDRMPPPNAWRPTHQPNTGTSFNAGFHGMGPPLMPRSGDMTLPISAGGPMTGMGASIDVRFQAQSPSAMPQQNFNQPRPQIPPVNQQMPPPQKPIQSSQEFPPSHQLYPQAPMPYSQTSTLPSLRQHVQPQPLSAGPQGLGISAQFSAPQPQANQSVLSATFPQTSLDTSIQSNTALTTPSRQQIPPSMQQHQQPLQPLQQSPSQLAQMVSQQTQTLQASFHSSQQAFSQLQQQLQMIQPSSQALTLPHHAEATKTQSQWGGPVSQAATGTHVAAPAAAAPSSTAATSSVQAISQNTTLPKCNWTEHLSPEGFKYYYNSVTGESRWEKPEELTLFEQQKQQPSQSVQQSQIQSQPSIPPTQQIVQSQQVHPQSHFREQALHHQQIQQPSSFQVYGVRGHQNVQELGYKQMPFVSAGDPGRYSQGINTTQERMWKNRPAGFSPLPNSSTPSLNTCTRTKTQTKRALVF 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04068 768 MobiDBLite consensus disorder prediction 1 84 - -
Vifa4g04068 768 MobiDBLite consensus disorder prediction 392 446 - -
Vifa4g04068 768 Gene3D - 181 272 IPR012677 -
Vifa4g04068 768 SUPERFAMILY RNA-binding domain, RBD 184 279 IPR035979 GO:0003676
Vifa4g04068 768 MobiDBLite consensus disorder prediction 478 507 - -
Vifa4g04068 768 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 158 IPR000504 GO:0003723
Vifa4g04068 768 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 252 IPR000504 GO:0003723
Vifa4g04068 768 Gene3D - 601 646 - -
Vifa4g04068 768 SMART rrm1_1 94 170 IPR000504 GO:0003723
Vifa4g04068 768 SMART rrm1_1 185 260 IPR000504 GO:0003723
Vifa4g04068 768 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 174 IPR000504 GO:0003723
Vifa4g04068 768 MobiDBLite consensus disorder prediction 265 302 - -
Vifa4g04068 768 MobiDBLite consensus disorder prediction 638 662 - -
Vifa4g04068 768 ProSitePatterns WW/rsp5/WWP domain signature. 605 630 IPR001202 GO:0005515
Vifa4g04068 768 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 264 IPR000504 GO:0003723
Vifa4g04068 768 ProSiteProfiles WW/rsp5/WWP domain profile. 605 632 IPR001202 GO:0005515
Vifa4g04068 768 CDD WW 602 632 IPR001202 GO:0005515
Vifa4g04068 768 MobiDBLite consensus disorder prediction 365 382 - -
Vifa4g04068 768 MobiDBLite consensus disorder prediction 365 446 - -
Vifa4g04068 768 Pfam WW domain 603 630 IPR001202 GO:0005515
Vifa4g04068 768 FunFam Flowering time control protein FCA 180 270 - -
Vifa4g04068 768 FunFam flowering time control protein FCA isoform X2 87 179 - -
Vifa4g04068 768 Gene3D - 90 180 IPR012677 -
Vifa4g04068 768 SUPERFAMILY WW domain 604 636 IPR036020 GO:0005515
Vifa4g04068 768 MobiDBLite consensus disorder prediction 550 581 - -
Vifa4g04068 768 PANTHER RNA BINDING PROTEIN 59 512 - -
Vifa4g04068 768 SMART ww_5 600 632 IPR001202 GO:0005515
Vifa4g04068 768 MobiDBLite consensus disorder prediction 550 567 - -
Vifa4g04068 768 SUPERFAMILY RNA-binding domain, RBD 57 172 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04068 Vifa-Chr4 1298466415 1298478174 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04068 92 269 Eukaryotic Initiation Factors Gene Family AT1G49760 24.479 1.35e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04068 - - tpra:123920645 1111.67