Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa4g04068 | ATGAACCACAACCGTCGAAGTCCCGGCGGTTTCCGCTCCGTCCCTGCCCCTCTCCATCGGAATTTTGATAGTCCACAGCGTTGGTCTCCGGGTAGGGTTGGGGGATTTCGTCCACCAGGTGGTGGAGAGGGGTTTAGGCCGATGGGAGGTGAAGGTGCTGGAGATTTTGGATTTAATAATCACCAGCCGGCGCCGGCGCCGATGTCTGGACAGAAACGAGGGTTTCCTTTCTCTGGACGCGGAGGTTCGCCAGATCATTTTGATGGTGGAAATTTTGCCAAACTTTTTGTTGGGTCTGTTCCTCGAACAGCAACTGAGGAAGATATCTGTCCTTTATTTGAGGAACACGGGAATGTGGTTGAGGTCGCCCTGATCAAAGATAGAAAGACAGGACAGCGTCAAGGTTGTTGTTTTATAAAGTATGCTACTTCAGAGGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAACATACTCTACCCGGCGGTGCTGGTCCCATCCAAGTGCGGTATGCTGATGGCGAACGGGAACGCCTTGGTGCAGTTGAGTACAAACTATTTGTGGGCTCTCTGAATAAACAGGCTCTCGTAAAGGAAGTTGAGGAAGTTTTCTCAAAATATGGGCGGGTTGAAGATGTTTATCTTATGCGTGATGACAAGAAGCAGAGTCGTGGATGTGGTTTTGTCAAATATTCTCACAGAGATATGGCACTGGCAGCTATTAATGGACTTAATGGAATATATACGATGAGAGGTTGTGATCAACCGCTGATTGTTCGGTTTGCTGATCCTAAGAGACCACGCCAAGGAGATTCCAGGGGTCCTGCATTTGGGGCTGCAGGATTTGGTCCTAGATTGGATGCACCTGGCACTAGATTTCCATCAAATAATTCTGACCCTATGGGTGATCGTATGCCTCCCCCTAATGCTTGGCGTCCAACCCATCAACCAAATACTGGTACATCCTTCAATGCTGGTTTTCACGGCATGGGGCCTCCATTGATGCCAAGATCTGGCGACATGACATTGCCTATAAGTGCAGGTGGTCCTATGACTGGCATGGGAGCCTCCATAGATGTCCGTTTTCAAGCTCAGTCTCCGTCAGCAATGCCACAACAGAATTTCAATCAGCCTCGACCGCAAATTCCACCGGTCAATCAACAAATGCCTCCGCCACAGAAACCTATTCAATCATCTCAGGAGTTTCCACCTTCACACCAGTTATATCCTCAAGCTCCGATGCCCTATTCACAAACATCAACACTTCCATCCCTCAGGCAACATGTTCAGCCACAACCTCTCTCTGCTGGTCCGCAGGGACTGGGCATTAGTGCACAGTTTTCAGCTCCTCAACCTCAAGCTAATCAGAGTGTTTTGTCTGCTACGTTTCCTCAGACCTCTCTTGATACTAGCATCCAATCTAATACAGCATTGACTACCCCAAGTCGACAGCAAATTCCTCCCTCTATGCAGCAGCATCAGCAGCCACTTCAACCTCTTCAGCAATCCCCTTCTCAGTTAGCCCAGATGGTGTCACAACAAACACAGACTTTACAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATCCAGCCATCCAGTCAAGCATTGACATTGCCGCATCATGCAGAAGCTACTAAAACACAGTCTCAATGGGGCGGGCCTGTTTCACAGGCAGCAACAGGCACTCATGTGGCCGCACCTGCTGCAGCTGCTCCTTCATCAACAGCTGCTACTTCTTCTGTACAAGCAATAAGCCAGAACACAACTCTTCCAAAATGTAATTGGACAGAGCATCTTTCTCCTGAAGGCTTCAAATACTACTACAATAGTGTGACTGGGGAAAGTCGGTGGGAGAAACCCGAAGAGTTGACATTGTTTGAACAGCAAAAGCAACAGCCCAGCCAGTCTGTTCAGCAGTCTCAAATTCAGTCACAGCCTTCAATACCACCCACCCAACAAATTGTACAAAGCCAACAGGTTCATCCTCAAAGTCATTTCCGAGAACAAGCTCTCCACCATCAACAAATACAGCAACCTTCCTCTTTCCAGGTATATGGAGTTAGAGGTCATCAAAATGTTCAGGAACTTGGTTATAAACAGATGCCATTTGTTTCTGCTGGTGATCCTGGACGTTATTCACAGGGTATTAATACTACACAAGAGCGAATGTGGAAAAACAGACCTGCAGGTTTCAGTCCTTTGCCAAACTCATCTACCCCCAGTTTGAACACATGCACACGCACAAAAACACAAACTAAACGGGCTTTAGTCTTTTAA | 2307 | 0.4759 | MNHNRRSPGGFRSVPAPLHRNFDSPQRWSPGRVGGFRPPGGGEGFRPMGGEGAGDFGFNNHQPAPAPMSGQKRGFPFSGRGGSPDHFDGGNFAKLFVGSVPRTATEEDICPLFEEHGNVVEVALIKDRKTGQRQGCCFIKYATSEEADQAIRALHNQHTLPGGAGPIQVRYADGERERLGAVEYKLFVGSLNKQALVKEVEEVFSKYGRVEDVYLMRDDKKQSRGCGFVKYSHRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPAFGAAGFGPRLDAPGTRFPSNNSDPMGDRMPPPNAWRPTHQPNTGTSFNAGFHGMGPPLMPRSGDMTLPISAGGPMTGMGASIDVRFQAQSPSAMPQQNFNQPRPQIPPVNQQMPPPQKPIQSSQEFPPSHQLYPQAPMPYSQTSTLPSLRQHVQPQPLSAGPQGLGISAQFSAPQPQANQSVLSATFPQTSLDTSIQSNTALTTPSRQQIPPSMQQHQQPLQPLQQSPSQLAQMVSQQTQTLQASFHSSQQAFSQLQQQLQMIQPSSQALTLPHHAEATKTQSQWGGPVSQAATGTHVAAPAAAAPSSTAATSSVQAISQNTTLPKCNWTEHLSPEGFKYYYNSVTGESRWEKPEELTLFEQQKQQPSQSVQQSQIQSQPSIPPTQQIVQSQQVHPQSHFREQALHHQQIQQPSSFQVYGVRGHQNVQELGYKQMPFVSAGDPGRYSQGINTTQERMWKNRPAGFSPLPNSSTPSLNTCTRTKTQTKRALVF | 768 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa4g04068 | 768 | MobiDBLite | consensus disorder prediction | 1 | 84 | - | - | |
Vifa4g04068 | 768 | MobiDBLite | consensus disorder prediction | 392 | 446 | - | - | |
Vifa4g04068 | 768 | Gene3D | - | 181 | 272 | IPR012677 | - | |
Vifa4g04068 | 768 | SUPERFAMILY | RNA-binding domain, RBD | 184 | 279 | IPR035979 | GO:0003676 | |
Vifa4g04068 | 768 | MobiDBLite | consensus disorder prediction | 478 | 507 | - | - | |
Vifa4g04068 | 768 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 95 | 158 | IPR000504 | GO:0003723 | |
Vifa4g04068 | 768 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 186 | 252 | IPR000504 | GO:0003723 | |
Vifa4g04068 | 768 | Gene3D | - | 601 | 646 | - | - | |
Vifa4g04068 | 768 | SMART | rrm1_1 | 94 | 170 | IPR000504 | GO:0003723 | |
Vifa4g04068 | 768 | SMART | rrm1_1 | 185 | 260 | IPR000504 | GO:0003723 | |
Vifa4g04068 | 768 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 93 | 174 | IPR000504 | GO:0003723 | |
Vifa4g04068 | 768 | MobiDBLite | consensus disorder prediction | 265 | 302 | - | - | |
Vifa4g04068 | 768 | MobiDBLite | consensus disorder prediction | 638 | 662 | - | - | |
Vifa4g04068 | 768 | ProSitePatterns | WW/rsp5/WWP domain signature. | 605 | 630 | IPR001202 | GO:0005515 | |
Vifa4g04068 | 768 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 184 | 264 | IPR000504 | GO:0003723 | |
Vifa4g04068 | 768 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 605 | 632 | IPR001202 | GO:0005515 | |
Vifa4g04068 | 768 | CDD | WW | 602 | 632 | IPR001202 | GO:0005515 | |
Vifa4g04068 | 768 | MobiDBLite | consensus disorder prediction | 365 | 382 | - | - | |
Vifa4g04068 | 768 | MobiDBLite | consensus disorder prediction | 365 | 446 | - | - | |
Vifa4g04068 | 768 | Pfam | WW domain | 603 | 630 | IPR001202 | GO:0005515 | |
Vifa4g04068 | 768 | FunFam | Flowering time control protein FCA | 180 | 270 | - | - | |
Vifa4g04068 | 768 | FunFam | flowering time control protein FCA isoform X2 | 87 | 179 | - | - | |
Vifa4g04068 | 768 | Gene3D | - | 90 | 180 | IPR012677 | - | |
Vifa4g04068 | 768 | SUPERFAMILY | WW domain | 604 | 636 | IPR036020 | GO:0005515 | |
Vifa4g04068 | 768 | MobiDBLite | consensus disorder prediction | 550 | 581 | - | - | |
Vifa4g04068 | 768 | PANTHER | RNA BINDING PROTEIN | 59 | 512 | - | - | |
Vifa4g04068 | 768 | SMART | ww_5 | 600 | 632 | IPR001202 | GO:0005515 | |
Vifa4g04068 | 768 | MobiDBLite | consensus disorder prediction | 550 | 567 | - | - | |
Vifa4g04068 | 768 | SUPERFAMILY | RNA-binding domain, RBD | 57 | 172 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa4g04068 | Vifa-Chr4 | 1298466415 | 1298478174 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa4g04068 | 92 | 269 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 24.479 | 1.35e-10 | 62.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa4g04068 | - | - | tpra:123920645 | 1111.67 |