Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04065 ATGGAGAATTCTTCAGCATCAGCATTTTTTGATGATATTCCTAACAACATGAACCAGGAAAGTTACATAGTTGATTTCCCTTTCTCACCTGCTTTACCATCCTGCAGTGTCTTTGACATTCCACCACCACCGTCACCACTGTTCGATTATCATAATCTAAATGATGCTTCTTTTGCTGGTAACATGGACTTGTTGATTTCGGATGATTTCGACAATTCTTGGTTCTCAAACTACAACTTTGAAACCGGTACGTCAGAATCACTACCTGCTGCCACCCAAACTGACATGCAGCTGCCTCCTTTGCCGGTTCTGTCCCCCACCGCAAATTTGGAGGTTTTGAATACTTCGTTGTGGAATGAGGCTGGTGTTGTTGCTAACAAACCAGTTGCTGCGGTAGCTGAGAATGCTGATAATGAAGATGGAGTTAAATTTGTTGAAGGAAAAAATGCTAGAGGTGAAGCTGAGGATAGCGATGGTGATCGTCGAATCCAAGTGGTGGAGAATGGAAATGATCAAACTCCGGCTAAGAAACCGGTGAAACAAAAGAAGAATGACAAGAAGAAGAAGCGAACAAGAGTTACTTTCATTACAGAAACTGGATTTAATTACTTGGACGATGGTTATAGGTGGCGCAAGTATGGCCAGAAACCTATCAAGAACAGCCCTTTTCCAAGGAGTTATTACCGTTGCACCACCCGGGGTTGTGGCGTGAAGAAGCACATAGAGCGTTATGCGGCTGAGCCTTGGTTGCTGCTAACTACTTATGAAGGCAAGCACACCCATCTACCTCCCAAGGTGACGCGTGCTACACACCTTGAAATCATGAATGATGCTATTGCTGATGGTGTCCGGAAAATCCACCATAACCAGATCAAGACTAATGGATTTGGTGTTGCGGGAAACCAATTCGCAATGTCTCACCCACAACAACAGCAGTTTCAGAACCTGAATCAGAATGTGATTTTTCACCGACCTGCATTGTCACCTTTGTCAAACAATAATGATTATAATAACTCCTTCAACATTGCTCCAACAGTGAATGTTAACTCTGCTAACAACGTTCCACCTTTGAATGTTGTTAACTCTTCTGCTGCTCACAATTCCCCACCTTTGAATGTTGTTAACTCTGGTGACAAATTCATCAACTCTTCGACAACATTTAGTGAATTCCTTCAAAATCTAGGTGGATGCAATTTTTCAATGTTGACAGATGATTTGACGAGCAACAATGGACTTCTCCAGGACATGATTATGCCAATGAAATGA 1266 0.425 MENSSASAFFDDIPNNMNQESYIVDFPFSPALPSCSVFDIPPPPSPLFDYHNLNDASFAGNMDLLISDDFDNSWFSNYNFETGTSESLPAATQTDMQLPPLPVLSPTANLEVLNTSLWNEAGVVANKPVAAVAENADNEDGVKFVEGKNARGEAEDSDGDRRIQVVENGNDQTPAKKPVKQKKNDKKKKRTRVTFITETGFNYLDDGYRWRKYGQKPIKNSPFPRSYYRCTTRGCGVKKHIERYAAEPWLLLTTYEGKHTHLPPKVTRATHLEIMNDAIADGVRKIHHNQIKTNGFGVAGNQFAMSHPQQQQFQNLNQNVIFHRPALSPLSNNNDYNNSFNIAPTVNVNSANNVPPLNVVNSSAAHNSPPLNVVNSGDKFINSSTTFSEFLQNLGGCNFSMLTDDLTSNNGLLQDMIMPMK 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04065 421 FunFam WRKY transcription factor 57 190 264 - -
Vifa4g04065 421 SUPERFAMILY WRKY DNA-binding domain 199 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g04065 421 MobiDBLite consensus disorder prediction 147 190 - -
Vifa4g04065 421 Gene3D WRKY domain 188 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g04065 421 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 157 312 IPR044810 GO:0003700
Vifa4g04065 421 MobiDBLite consensus disorder prediction 147 165 - -
Vifa4g04065 421 Pfam WRKY DNA -binding domain 205 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g04065 421 SMART WRKY_cls 204 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g04065 421 ProSiteProfiles WRKY domain profile. 199 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04065 Vifa-Chr4 1297885477 1297887126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04065 76 269 WRKY Transcription Factor Family AT4G18170 41.791 4.84e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa4g04065 WRKY 1.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04065 - - psat:127073167 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04065 4 1297885477 1297887126 Vifa4g04065 4 1297885477 1297887126 ECH
Vifa1g09519 1 1518079187 1518080744 Vifa4g04065 4 1297885477 1297887126 PCT