Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04064 ATGATATCACCATCTTCTACAATAAAAAACACGAACACGTCACGTGGCTCAAATACAAAGAAACCAAAGAACAAGAAGCATCATCAAGATTCTCAGATTCATATCAACCCTAAATGGAAATCCCAAGCACAACAACAACTCTACTCCACCAAACTCCGTCACGCCATAACAAAACTCAACTCAACAACCACTCCCCGCCGTGGAAAAGCTGTCCGTGAAGCAGCCGACAGAGCTCTAGCCGTGACAGCCAAAGGAAGAACCCGATGGAGCCGAGCCATTCTGATGACCCGGCTCAAACTCAGCTTCATGAAGAATAAGAACAGGAAGAAGAAGATACATCGCGTAACGGCTTTATTACCGTCTACGCGATCGAAGAAGTCGAGAGTGAATGTTTTCCGGTTGAAAGGTAGGGTGTTTCCCGGAGTGCAGAGTAAGGTACGGTTTCTTGGAAGGTTGGTTCCTGGTTGCAAGAATGAACCGTTACCGGTGATATTGGAAGAAGCTATTGATTATATACCTGCGCTTGAGATGCAGGTTCGAGCCATGAGTGCTCTTTTTAATCTGCTATCGGCGGCGTCTAGTTCCGGTGCCGGTGGAACTTCCGGTTCCGGCCGATAG 618 0.4741 MISPSSTIKNTNTSRGSNTKKPKNKKHHQDSQIHINPKWKSQAQQQLYSTKLRHAITKLNSTTTPRRGKAVREAADRALAVTAKGRTRWSRAILMTRLKLSFMKNKNRKKKIHRVTALLPSTRSKKSRVNVFRLKGRVFPGVQSKVRFLGRLVPGCKNEPLPVILEEAIDYIPALEMQVRAMSALFNLLSAASSSGAGGTSGSGR 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04064 205 MobiDBLite consensus disorder prediction 1 18 - -
Vifa4g04064 205 MobiDBLite consensus disorder prediction 1 34 - -
Vifa4g04064 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 191 IPR036638 GO:0046983
Vifa4g04064 205 CDD bHLH_AtIBH1_like 133 185 IPR044549 GO:0006355
Vifa4g04064 205 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 41 189 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04064 Vifa-Chr4 1297042587 1297043204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04064 38 202 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 48.571 4.34e-46 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04064 - - gmx:100803765 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04064 4 1297042587 1297043204 Vifa1g09517 1 1516400890 1516401504 PCT