Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04063 ATGGAGCCAGGAATTCCCCCGTCAACTCCCGATTCGCCAACATCTCCATCCATCGGTTTCAACACCGACCAACTTCCTCACACTCACACCAGCCGCGCTTCCGACGACGAAGCTTCCGTTGATCCCGACATCATTCGCGACGAACCTGAGCCGGAGGAAGATGAAGACGGAGAAGATCTATACAACGATAACTTTCTCGAGGATTATCGGAGGATGGATGAAGCTGACCAGTTCGAATCTGTTGGATTGGATGATTCTGTTGAAGATGAGAGAGATTTTGATCAGATCATGGAGGATCGTAGGGCTGCTGAGGTTGAGCTTGATACTCGAGATGGTCGTGCTTCCAATCGTACTAAGCTTCCTCAGCTTCTTCACGACCAGGATACTGATGATGACGGTTACAGGCCTTCTAAAAGGGCTAGAGCTGATCACAGGTCTTCTATACCACCAAGCGATGATGATCTTGATGGGATGAATAGTTCACCTGGAAGGTCACAACGAGGACAACACTCGAGGGACGATAATCCAACCACTGATCAAAATGAGGATGACCAGTATGAGGATGATTTTGATGATGAAGCTGGGTATGAGATGTACCGTGTTCAAGGAACTCTCAGAGAATGGGTTACAAGAGATGAAGTGCGCCGTTTCATAGCCAGGAAATTCAAGGATTTCTTACTCACTTATGTCAATCCGAAGAATGAACATGGCGACTTTGAGTATGTACGTCTGATTAATGAAATGGTGTCAGCTAACAAGTGCAGTTTGGAGATAGATTACAAGCAATTTATCTATGTCCATCCCAACATTGCTATTTGGCTGGCTGATGCACCTCATTCTGTTCTAGAAGTGATGGAAGATGTTGCTAAAAGTGTTGTCTTTCAGCTACATCCTAATTACAAACATATACATCAGAAGATTTATGTTCGCATTACCAACTTACCAGTTTATGATCAGATCCGAAATATTAGACAGATTCATTTGAATACAATGATCCGAATTGGGGGAGTTGTAACTAGGCGTTCTGGAGTTTTCCCCCAGTTGCAACAGGTGAAGTATGACTGTAGCAAGTGTGGGGCAATTTTGGGGCCATTTTTTCAGAACTCCTATTCAGAGGTGAAAGTTGGTTCCTGTCCTGAGTGTCAATCAAAAGGACCATTCACTGTCAATATTGAACAGACAATCTACAGGAATTTTCAAAAGCTCACTCTTCAAGAGAGCCCAGGAATAGTTCCTGCTGGGCGATTGCCAAGATACAAGGAAGTGATACTATTGAATGATCTGATTGACTGTGCTCGACCTGGAGAAGAGATTGAGGTCACAGGTGTTTATACTAATAACTTTGACTTGTCCCTTAACACAAAGAATGGTTTTCCAGTGTTTTCCACCGTTGTAGAGGCAAATCATGTTACAAAGAAACAAGATCTCTTTTCTGCCTACAAACTCACACAGGAAGACAAAGAAGAGATTGAAAATTTGGGCAAAGACCCCCGAATTGGAGAAAGGATTGTCAAGTCTATTGCTCCGTCAATCTATGGTCATGATGATATAAAAACTGGAATAGCTTTAGCTATGTTTGGAGGTCAAGAAAAGAATGTTGAAGGGAAGCATCGTCTGCGTGGAGACATTAATGTTCTTCTTCTCGGCGATCCAGGAACAGCAAAGTCTCAATTTCTGAAGTATGTTGAAAAAACTGGCCAGAGAGCTGTATACACCACTGGCAAAGGAGCTTCTGCTGTGGGTCTCACTGCTGCAGTACACAAGGATCCTGTCACAAGGGAATGGACCCTTGAAGGGGGAGCTCTTGTTCTAGCTGACAGAGGGATTTGTCTCATTGATGAATTTGACAAGATGAATGACCAGGATCGAGTAAGTATTCATGAAGCCATGGAGCAGCAGAGCATAAGCATATCAAAAGCTGGAATTGTCACATCTCTTCAGGCACGCTGTTCTGTCATCGCTGCTGCAAATCCAATTGGAGGAAGATATGATTCCTCAAAATTGTTTACACAGAATGTTGAATTGACAGATCCTATTATTTCTCGTTTTGACATCCTCTGCGTTGTGAAGGATGTGGTTGATCCAGTCACTGATGAAATGCTTGCAAAGTTTGTTGTTGACAGTCACTTCAAGTCCCAACCCAAGGGTGTTAACAATGATGATAAGTCCCAGGATGCATCTGGCATGCCAACTGACCCAGAGATACTCCCTCAAGATCTGTTGAAGAAGTACATTACATATGCCAAGTTGAATGTTTTCCCAAGGTTTAATGATGCTGATTTGGATAAGCTTACTCATGTGTATGCAGAACTTCGGAGGGAATCATCACATGGTCAAGGAGTCCCCATTGCTGTAAGACACATTGAATCAATGATAAGGATGTCTGAAGCTCATGCTAGAATGCATCTCAGACAGCATGTCACACCAGAGGATGTGGACATGGCAATTCGTGTTCTACTTGATTCGTTCATTTCAACCCAGAAGTTTGGGGTGCAGAAAGCACTGCAAAAGAGCTTTAGAAAGTATATCACTTTCAAGAAGGACTATAATGATGTGCTCCTTTATATTCTCGGATTGCTTGTAAAGGGTGCTATTGATTTTGAAGAAATTGTTGCTGGATCTACTTCTAGTTTGACGCATGTAGAAGTCAAAGTAGATGATCTCTCCATGAAGGCTCAAGAGCATGATATATATGATCTGAAGCCGTTCTTCAACAGCAGCCAGTTTTCAAGGTCCAATTATGTATTAGATGAAGAGCGATCAATGATCATACATCACCTCAGGTGA 2787 0.4284 MEPGIPPSTPDSPTSPSIGFNTDQLPHTHTSRASDDEASVDPDIIRDEPEPEEDEDGEDLYNDNFLEDYRRMDEADQFESVGLDDSVEDERDFDQIMEDRRAAEVELDTRDGRASNRTKLPQLLHDQDTDDDGYRPSKRARADHRSSIPPSDDDLDGMNSSPGRSQRGQHSRDDNPTTDQNEDDQYEDDFDDEAGYEMYRVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNEHGDFEYVRLINEMVSANKCSLEIDYKQFIYVHPNIAIWLADAPHSVLEVMEDVAKSVVFQLHPNYKHIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCSKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKNGFPVFSTVVEANHVTKKQDLFSAYKLTQEDKEEIENLGKDPRIGERIVKSIAPSIYGHDDIKTGIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKLFTQNVELTDPIISRFDILCVVKDVVDPVTDEMLAKFVVDSHFKSQPKGVNNDDKSQDASGMPTDPEILPQDLLKKYITYAKLNVFPRFNDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTPEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYITFKKDYNDVLLYILGLLVKGAIDFEEIVAGSTSSLTHVEVKVDDLSMKAQEHDIYDLKPFFNSSQFSRSNYVLDEERSMIIHHLR 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04063 928 Gene3D - 212 316 - -
Vifa4g04063 928 SUPERFAMILY Nucleic acid-binding proteins 221 468 IPR012340 -
Vifa4g04063 928 Gene3D - 347 397 - -
Vifa4g04063 928 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 205 843 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vifa4g04063 928 Gene3D - 320 445 IPR012340 -
Vifa4g04063 928 MobiDBLite consensus disorder prediction 14 28 - -
Vifa4g04063 928 Pfam Mini-chromosome maintenance protein 2 35 193 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Vifa4g04063 928 CDD MCM2 502 822 - -
Vifa4g04063 928 FunFam DNA helicase 347 397 - -
Vifa4g04063 928 MobiDBLite consensus disorder prediction 123 151 - -
Vifa4g04063 928 Gene3D - 479 846 IPR027417 -
Vifa4g04063 928 Pfam MCM P-loop domain 487 709 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa4g04063 928 Pfam MCM OB domain 319 446 IPR033762 -
Vifa4g04063 928 MobiDBLite consensus disorder prediction 63 78 - -
Vifa4g04063 928 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 463 474 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Vifa4g04063 928 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 329 346 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Vifa4g04063 928 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 352 364 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Vifa4g04063 928 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 448 459 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Vifa4g04063 928 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 387 401 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Vifa4g04063 928 MobiDBLite consensus disorder prediction 41 62 - -
Vifa4g04063 928 MobiDBLite consensus disorder prediction 713 732 - -
Vifa4g04063 928 FunFam DNA helicase 479 846 - -
Vifa4g04063 928 ProSitePatterns MCM family signature. 608 616 IPR018525 GO:0003677|GO:0005524|GO:0006260
Vifa4g04063 928 MobiDBLite consensus disorder prediction 1 189 - -
Vifa4g04063 928 ProSiteProfiles MCM family domain profile. 499 705 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa4g04063 928 FunFam DNA helicase 212 316 - -
Vifa4g04063 928 PRINTS Mini-chromosome maintenance (MCM) protein family signature 679 687 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa4g04063 928 PRINTS Mini-chromosome maintenance (MCM) protein family signature 540 555 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa4g04063 928 PRINTS Mini-chromosome maintenance (MCM) protein family signature 628 641 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa4g04063 928 PRINTS Mini-chromosome maintenance (MCM) protein family signature 652 664 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa4g04063 928 PRINTS Mini-chromosome maintenance (MCM) protein family signature 600 614 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa4g04063 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 509 827 IPR027417 -
Vifa4g04063 928 Pfam MCM AAA-lid domain 739 823 IPR041562 -
Vifa4g04063 928 Pfam MCM N-terminal domain 220 313 IPR027925 -
Vifa4g04063 928 SMART mcm 316 824 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vifa4g04063 928 MobiDBLite consensus disorder prediction 93 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04063 Vifa-Chr4 1295545638 1295550546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04063 19 923 Core DNA Replication Machinery Family AT1G44900 75.978 0.0 1360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04063 K02540 - gmx:100799441 1604.34