Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04049 ATGACAGGAAGTGAAGAAAGAGATGAAGCAGTGAAGAAGAAGATCCAGGAGCTAGAAGAAGGCCATGCTTTCATGAAGCAAGAAATGTCGAAGCTCAAGCTTTCTGATGGAAGAGAACAACAACAACTTCATCAACAACAACATCGTCAAAGGTCTCAGTCTGTGTCTCCTCAACGGTCTAGATTGGGTTCATGGAACAAAGGTTCTTGTTCTTTTAAACATTCATCGCCGCTTCGAAAGGAAACTCGTGCTTCTGCACTTGTGAATTTTACTGAGAAACATTATCTTAGTATTTTGCAATGTTTGGGACATTCTCTTCATATTTTGGATCTTAACTCTCGTATCATTTACTGGAACCGTAGTGCTGAAAATCTATATGGTTATGCGGCGGAGGAAGTTTTGGGGGAAGAGGGGATTGATTTGCTAGTGGATCCTAGGGATTGGGGATTAGCTTGTGATACGGTGAACTGTGTTATGAAGGGAGAGAGATGGAGCGGTCAATTCCTAGTCAAGAACAAGAAAGGAGAAAGGTTTTTAGCTGTAACATCCAATACTCCTTTTTATGATGATGGAAGCTTAGTTGGGATTATCTGTGTGTCGAGTGATTCGCGGCCATTTCTTGAAATGAGAGCTCCGTTTTATGGTGTAAAGAATGCTGAACCGGATTATGTTTCTGCTCGTCCTAAAAGTAGCATTACAAATCATCTTGGCTTTGACTCTCAGCAGCCGCTTCAAACTGCTCTAGCATCTAAAATTTCTAATTTGGCATCGAAGGTGAGTAACAAAGTTAAGTCGAGAATCTGGACGGGAGAAAATAATGTAGACCATGAAGGCGGGAATGGAGAAAGTCGTAATTCTGAACATGGTTTCGTAGAACACAGAGAAGATGCTAATTCAAGCGGAGCTAGCACACCAAGAGGTGATTTGCCACAGTCCCCTGTTGGTATATTTTACCGTATTGAAGAAAAGTTTGAAGGAAAAACTTTGAGAGACTCTGGTGACGAGAGTGAAGGAAAACCGGATCACAAAGTTTTACATACTAAGGCTGAAGCCTGGGTTCAAAAGAAAACATTATCATGGCCATGGAGAACAAATGACCGTGAAGAATCAGAGGCAAGGAACGTGCGTGCTTCTGAGCCATGGAGGCAGAATGATCAAGAAAATGAGTCCGTTAGTCAGAAGAATCTTTCTTCGAGCTTGAAGCAGGAAAGTCAGGCCGGTGAAAGTAATCGCCGAACTAATAATGAGGCTTCAATACCCCGTTCTGCCTCCTATAATGTTATCAGCACAAGTAGTGCCAGCAGCTCTGGGAGTGCTGGCAGTGGTGCTGCCTATAGCAAAATGGATGTAGACTCTGACTGTTTGGATTATGAAATTTTGTGGGAGGATTTGACAATTCGAGAACAAATAGGACAGGGTTGTTGTGGAACTGTATACCATGCTCTGTGGTATGGATCAGATGTTGCTGTCAAGGTTTTCTCAAAGCAAGAGTATTCAGATGATGTGATACTGTCGTTCAGACAAGAGGTATCTGTCATGAAAAGACTTCGGCACCCAAATATTCTTCTCTTTATGGGAGCAGTAACTTCACCTCAACGTCTTTGTATTGTGACGGAGTTTCTCCCACGCGGCAGCTTGTGTCGCTTGTTACACAAAAACACACCCAAACTTGACTGGAGACGACGAGTACTTATGGCCTTGGATATTGCACGAGGTGTAAATTATCTTCATCATTATAACCCGCCTATCATACATAGAGATTTGAAGTCTTCAAATCTTCTAGTTGATAAGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGTCTTAAGCATGAAACATATCTCACAACCAAGACAGGAAGGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACCGTCAGATGAGAAGTCTGATGTATATAGCTTTGGGGTGATATTATGGGAACTTGCGACCGAAAAGATTCCTTGGGATACTCTAAACTCAATGCAGGTAATTGGAGCTGTAGGGTTCATGAATCAGCGTCCAGAAATTCCAAAAGAGGTTGATCCAGGGTGGGCTTCTTTAATTGAGATCTGTTGGCACAGCGATCCAACTTGCCGACCAACTTTTCCAGAACTGCTTGAAAGGCTTAGAGAGTTGCAAAGACGGTATGTCCTTGAGTTCCAAGCAGCCCGATCTGCTGGTGGCGAAAGCATCCAAAGAAAAGAGCCATAG 2232 0.4297 MTGSEERDEAVKKKIQELEEGHAFMKQEMSKLKLSDGREQQQLHQQQHRQRSQSVSPQRSRLGSWNKGSCSFKHSSPLRKETRASALVNFTEKHYLSILQCLGHSLHILDLNSRIIYWNRSAENLYGYAAEEVLGEEGIDLLVDPRDWGLACDTVNCVMKGERWSGQFLVKNKKGERFLAVTSNTPFYDDGSLVGIICVSSDSRPFLEMRAPFYGVKNAEPDYVSARPKSSITNHLGFDSQQPLQTALASKISNLASKVSNKVKSRIWTGENNVDHEGGNGESRNSEHGFVEHREDANSSGASTPRGDLPQSPVGIFYRIEEKFEGKTLRDSGDESEGKPDHKVLHTKAEAWVQKKTLSWPWRTNDREESEARNVRASEPWRQNDQENESVSQKNLSSSLKQESQAGESNRRTNNEASIPRSASYNVISTSSASSSGSAGSGAAYSKMDVDSDCLDYEILWEDLTIREQIGQGCCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHKNTPKLDWRRRVLMALDIARGVNYLHHYNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDTLNSMQVIGAVGFMNQRPEIPKEVDPGWASLIEICWHSDPTCRPTFPELLERLRELQRRYVLEFQAARSAGGESIQRKEP 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04049 743 SUPERFAMILY PYP-like sensor domain (PAS domain) 90 202 IPR035965 -
Vifa4g04049 743 SUPERFAMILY Protein kinase-like (PK-like) 453 716 IPR011009 -
Vifa4g04049 743 Gene3D PAS domain 104 205 - -
Vifa4g04049 743 Pfam PAS fold 94 200 IPR013767 GO:0006355
Vifa4g04049 743 ProSiteProfiles Protein kinase domain profile. 464 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04049 743 MobiDBLite consensus disorder prediction 363 422 - -
Vifa4g04049 743 MobiDBLite consensus disorder prediction 46 73 - -
Vifa4g04049 743 MobiDBLite consensus disorder prediction 384 422 - -
Vifa4g04049 743 NCBIfam PAS domain S-box protein 92 202 IPR000014 -
Vifa4g04049 743 Gene3D Phosphorylase Kinase; domain 1 457 541 - -
Vifa4g04049 743 PRINTS Tyrosine kinase catalytic domain signature 643 665 IPR001245 GO:0004672|GO:0006468
Vifa4g04049 743 PRINTS Tyrosine kinase catalytic domain signature 687 709 IPR001245 GO:0004672|GO:0006468
Vifa4g04049 743 PRINTS Tyrosine kinase catalytic domain signature 577 595 IPR001245 GO:0004672|GO:0006468
Vifa4g04049 743 PRINTS Tyrosine kinase catalytic domain signature 624 634 IPR001245 GO:0004672|GO:0006468
Vifa4g04049 743 PRINTS Tyrosine kinase catalytic domain signature 538 551 IPR001245 GO:0004672|GO:0006468
Vifa4g04049 743 Gene3D Transferase(Phosphotransferase) domain 1 543 727 - -
Vifa4g04049 743 MobiDBLite consensus disorder prediction 29 45 - -
Vifa4g04049 743 MobiDBLite consensus disorder prediction 327 348 - -
Vifa4g04049 743 MobiDBLite consensus disorder prediction 294 313 - -
Vifa4g04049 743 Pfam Protein tyrosine and serine/threonine kinase 464 716 IPR001245 GO:0004672|GO:0006468
Vifa4g04049 743 MobiDBLite consensus disorder prediction 363 383 - -
Vifa4g04049 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 583 595 IPR008271 GO:0004672|GO:0006468
Vifa4g04049 743 ProSiteProfiles PAS repeat profile. 91 162 IPR000014 -
Vifa4g04049 743 Coils Coil 15 35 - -
Vifa4g04049 743 SMART serkin_6 464 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04049 743 SMART pas_2 93 160 IPR000014 -
Vifa4g04049 743 MobiDBLite consensus disorder prediction 29 76 - -
Vifa4g04049 743 CDD STKc_MAP3K-like 470 716 - -
Vifa4g04049 743 CDD PAS 108 202 IPR000014 -
Vifa4g04049 743 FunFam PAS domain-containing protein tyrosine kinase 457 541 - -
Vifa4g04049 743 FunFam PAS domain-containing protein tyrosine kinase family protein 542 733 - -
Vifa4g04049 743 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 219 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04049 Vifa-Chr4 1292622224 1292626979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04049 9 733 MAP Kinase Kinase Kinase AT3G06620 57.943 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vifa4g04049 PK_Tyr_Ser-Thr 2.7e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04049 - - gmx:100800867 1087.02