Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04025 ATGGATAATAACTTGTTGGGTCAACAACTAGTTGGATCAGATATTCATGGATTTCACACATTGCAAGAGCTGGATGTTGCGAGCATTATGGAGGAGGCAAGAACAAGATGGCTTCGCCCTAATGAGATTCATGCCATGCTTTGCAATCGCAAGTATTTCACTATCAATGTCAAGCCAATGAATTTGCCCAAAAGTGGTACTATTGTATTATTTGACCGTAAGATGCTTCGGAACTTTAGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGAAAAACTGTTAAGGAAGCTCATGAGCATTTAAAAGTTGGTAATGAAGAAAGGATCCATGTATATTATGCACATGGTCAAGATAACCCAAACTTTGTCCGTAGATGTTATTGGCTGCTTGATAAGAGTCTGGAACACATAGTCCTAGTTCATTACCGTGAAACACGGGAGCTTCAAGGATCTCCCATCACTCCCGTAAATTCAAACTCTACTTCTGCCTCTGACCCTACTGCACCATGGATTTTGTCGGAAGAAATAGATTCAGGGACCAAAACTGCATATGCTGGTGATATTAATAACAATATAACAGTCAAAAGTCATGAACTGAGGCTTCATGAGCTTAATACACTTGAATGGGATGAGCTAGTTGTTACAAACGATCTTAACGCCTCAACTGTACCTAATGGAGGAAAAAATCCATATTTTGATCAACAAAATCAAATTTTACCAAATGACAGTTTTAGCAATGCAGCCAGCAATGCATCTACAGAAGTTCGTTCTTTCAATATTTCAACTCAGCCAATTCCAGGGAGCTACAGTGTTCCATTCAATTTTTCCGAAGGTGTTACTCTTCAGACAATTGACAATCAAGGAAATCAAAATGAGTCGAGGAACCATCCTATCCCTTCAAGTGGCATTGATTCCTTCAACACTTTGGTCAATGACAGATTGCCTGTCTCTTCAAGTGGCGTTGATTCCTTAAACACTTTGATCAATGACAGATTGCAAAGTCAGGACAGCTTAGGAATGTGGGTGAACCCAATCATGTCTGGTTCCCCTTGTTCAGTTGATGATTCGGCTCTTGGATCCTCAGTTTCATCCGTAGTGGATAATCAGCAACTTCCCCTTCCAGAACAAATATTTAATCTCACCGATGTGTTCCCTGCATGGGTGTATTCCACGGAGAAATCAAAGGTCCTAGTGACTGGACTCTTTCAAATAGACTATCAGCACCTCTCAAAGTCCAATCTAACATGTGTCTGTGGTGATGAAGTCGTTCCTGCAGAAATTGTTCAGGATGGGGTATACCGATGTTGGGTTCCACCGCATACTCCAGGATTCGTGAATCTCTACTTGAGCTTAGATGGCCATAATCCTATCAGCCAAGTTGTTCATTTTGAGTACCGTACTCCTGTTTTGCACGATCCAATTGCTTCTGTGGAAGAAAAGGACAATTGGGACGAGGTTCAACTTCAGATGAGGCTTGCTTATTTGCTCTTTGCTAAACAACAAAGTCTTGATGTCATCTCTAGTAAAGTATCATCTAGTAGATTAAAGGAGGCAAGGGAATTCTCCTTAAAGACGTCATTTATTTCCAATACTTGGCAATACTTAATGAAGTCAACTTTAGATCACAAAATTCCATTTTCGCAAGCAAAAGATGACCTGTTTCGAATTGCATTGAAAAACAGATTAAAGGAATGGCTTTTGGAAAAAATTGTTTTAGGATGTAAGATTACTGAATATGATGCACAAGGGCAAAGTGTCATCCATTTGTGTGTAATTTTGGGATATACATGGGCGGTTACTTTATTTTCATGGTCAGGCTTGTCGCTAGATTTCCGGGATAAATTTGGATGGACTGCTCTTCATTGGGCCGCATATTATGGCAGGGAGAAAATGGTTGCAACTTTATTATCAGCCGGGGCAAAGCCAAATTTGGTCACAGATCCAACTCACCAAAACCCTGGTGGATGTACTGCCGCCGATCTTGCTCACACGAGGGGTTATCATGGTTTAGCAGCTTATCTTTCGGAAAAGTCTCTAGTTGAGCAGTTCAATGACATGAGCTTGGCTGGAAATATCAGTGGCTCACTGGAAACTAGCACGGATGAACCAGTAAATACCGAGAACCTTACCGAGGAGCAGCTCTACCTGAAAGATACATTGGCAGCTTACCGGACAGCTGCTGATGCAGCTGCACGCATACAAGAAGCATATAGGCAGCATTCTTTAAAATTACGAACGGAGGCGGTTGAGTTTTCCAGCCCAGAAGCCGAAGCACGCAAAATAGTTGCAGCAATGAAGATTCAGCACGCCTTCCGCAATTTTGAGACCAAGAAAGTCATGGCTGCTGCTGCTCGCATACAATATAGATTCCGTACATGGAAGATTCGTAAAGATTTCCTCAACATGCGTCGTCAAGTTATCAAGATTCAAGCTGCTTTCCGATGCTTTCAACAACGGAAACATTATTGTAAAATTCTTTGGTCAGTTGGTGTTGTTGAGAAAGCAGTGCTACGTTGGCGTTTAAAGAGAAAAGGCTTCCGTGGGCTCCAGCTTAATACCGCAGAAGCAGAGGAAAATCAGAATCAGCAAAGTGATGCAGAAGAAGAATTCTTTAGAACTGGTAGGAAACAAGCTCAAGAACGCGTTGAGAGAAGTGTAATACGAGTGCAGGCTATGTTCCGTTCTAAGAAAGTGCAAGAAGATTACAGGAGGATGAAGTTGGCACTTAAACAAGCAAAGATGGAACGGGAATTCGAAGAGGTGATTAGTACTGAAGTTGACATGGGAATGAAGAGATAG 2802 0.4158 MDNNLLGQQLVGSDIHGFHTLQELDVASIMEEARTRWLRPNEIHAMLCNRKYFTINVKPMNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKSLEHIVLVHYRETRELQGSPITPVNSNSTSASDPTAPWILSEEIDSGTKTAYAGDINNNITVKSHELRLHELNTLEWDELVVTNDLNASTVPNGGKNPYFDQQNQILPNDSFSNAASNASTEVRSFNISTQPIPGSYSVPFNFSEGVTLQTIDNQGNQNESRNHPIPSSGIDSFNTLVNDRLPVSSSGVDSLNTLINDRLQSQDSLGMWVNPIMSGSPCSVDDSALGSSVSSVVDNQQLPLPEQIFNLTDVFPAWVYSTEKSKVLVTGLFQIDYQHLSKSNLTCVCGDEVVPAEIVQDGVYRCWVPPHTPGFVNLYLSLDGHNPISQVVHFEYRTPVLHDPIASVEEKDNWDEVQLQMRLAYLLFAKQQSLDVISSKVSSSRLKEAREFSLKTSFISNTWQYLMKSTLDHKIPFSQAKDDLFRIALKNRLKEWLLEKIVLGCKITEYDAQGQSVIHLCVILGYTWAVTLFSWSGLSLDFRDKFGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPTHQNPGGCTAADLAHTRGYHGLAAYLSEKSLVEQFNDMSLAGNISGSLETSTDEPVNTENLTEEQLYLKDTLAAYRTAADAAARIQEAYRQHSLKLRTEAVEFSSPEAEARKIVAAMKIQHAFRNFETKKVMAAAARIQYRFRTWKIRKDFLNMRRQVIKIQAAFRCFQQRKHYCKILWSVGVVEKAVLRWRLKRKGFRGLQLNTAEAEENQNQQSDAEEEFFRTGRKQAQERVERSVIRVQAMFRSKKVQEDYRRMKLALKQAKMEREFEEVISTEVDMGMKR 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04025 933 SUPERFAMILY E set domains 380 467 IPR014756 -
Vifa4g04025 933 FunFam calmodulin-binding transcription activator 5 546 686 - -
Vifa4g04025 933 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Vifa4g04025 933 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 723 830 IPR027417 -
Vifa4g04025 933 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 25 913 - -
Vifa4g04025 933 SMART ANK_2a 616 645 IPR002110 GO:0005515
Vifa4g04025 933 ProSiteProfiles IQ motif profile. 803 827 IPR000048 GO:0005515
Vifa4g04025 933 SMART iq_5 779 801 IPR000048 GO:0005515
Vifa4g04025 933 SMART iq_5 802 824 IPR000048 GO:0005515
Vifa4g04025 933 SMART iq_5 882 904 IPR000048 GO:0005515
Vifa4g04025 933 SMART CG_1_2 29 147 IPR005559 GO:0003677
Vifa4g04025 933 SUPERFAMILY Ankyrin repeat 556 678 IPR036770 -
Vifa4g04025 933 Pfam Ankyrin repeats (3 copies) 564 645 IPR002110 GO:0005515
Vifa4g04025 933 Pfam IQ calmodulin-binding motif 805 823 IPR000048 GO:0005515
Vifa4g04025 933 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Vifa4g04025 933 Pfam IPT/TIG domain 381 466 IPR002909 -
Vifa4g04025 933 Coils Coil 896 916 - -
Vifa4g04025 933 ProSiteProfiles IQ motif profile. 884 912 IPR000048 GO:0005515
Vifa4g04025 933 Gene3D Immunoglobulins 375 470 IPR013783 -
Vifa4g04025 933 Gene3D - 543 685 IPR036770 -
Vifa4g04025 933 Coils Coil 850 870 - -
Vifa4g04025 933 Gene3D - 777 827 - -
Vifa4g04025 933 ProSiteProfiles IQ motif profile. 781 809 IPR000048 GO:0005515
Vifa4g04025 933 ProSiteProfiles Ankyrin repeat region circular profile. 616 644 - -
Vifa4g04025 933 ProSiteProfiles Ankyrin repeat profile. 616 648 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04025 Vifa-Chr4 1286382436 1286390049 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04025 29 916 CAMTA Transcription Factor Family AT3G16940 53.059 0.0 906
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vifa4g04025 CG-1 8.6e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04025 K21596 - gmx:100793970 1442.17