Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04024 ATGGATAATAACTTGTTGGGTCAACAACTAGTTGGATCAGATATTCATGGATTTCACACATTGCAAGAGCTGGATGTTGCGAGCATTATGGAGGAGGCAAGAACAAGATGGCTTCGCCCTAATGAGATTCATGCCATGCTTTGCAATCGCAAGTATTTCACTATCAATGTCAAGCCAATGAATTTGCCCAAAAGTGGTACTATTGTATTATTTGACCGTAAGATGCTTCGGAACTTTAGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGAAAAACTGTTAAGGAAGCTCATGAGCATTTAAAAGTTGGTAATGAAGAAAGGATCCATGTATATTATGCACATGGTCAAGATAACCCAAACTTTGTCCGTAGATGTTATTGGCTGCTTGATAAGAGTCTGGAACACATAGTCCTAGTTCATTACCGTGAAACACGGGAGGTTTGTCTTCAAGGATCTCCCATCACTCCCGTAAATTCAAACTCTACTTCTGCCTCTGACCCTACTGCACCATGGATTTTGTCGGAAGAAATAGATTCAGGGACCAAAACTGCATATGCTGGTGATATTAATAACAATATAACAGTCAAAAGTCATGAACTGAGGCTTCATGAGCTTAATACACTTGAATGGGATGAGCTAGTTGTTACAAACGATCTTAACGCCTCAACTGTACCTAATGGAGGAAAAAATCCATATTTTGATCAACAAAATCAAATTTTACCAAATGACAGTTTTAGCAATGCAGCCAGCAATGCATCTACAGAAGTTCGTTCTTTCAATATTTCAACTCAGCCAATTCCAGGGAGCTACAGTGTTCCATTCAATTTTTCCGAAGGTGTTACTCTTCAGACAATTGACAATCAAGGAAATCAAAATGAGTCGAGGAACCATCCTATCCCTTCAAGTGGCATTGATTCCTTCAACACTTTGGTCAATGACAGATTGCCTGTCTCTTCAAGTGGCGTTGATTCCTTAAACACTTTGATCAATGACAGATTGCAAAGTCAGGACAGCTTAGGAATGTGGGTGAACCCAATCATGTCTGGTTCCCCTTGTTCAGTTGATGATTCGGCTCTTGGATCCTCAGTTTCATCCGTAGTGGATAATCAGCAACTTCCCCTTCCAGAACAAATATTTAATCTCACCGATGTGTTCCCTGCATGGGTGTATTCCACGGAGAAATCAAAGGTCCTAGTGACTGGACTCTTTCAAATAGACTATCAGCACCTCTCAAAGTCCAATCTAACATGTGTCTGTGGTGATGAAGTCGTTCCTGCAGAAATTGTTCAGGATGGGGTATACCGATGTTGGGTTCCACCGCATACTCCAGGATTCGTGAATCTCTACTTGAGCTTAGATGGCCATAATCCTATCAGCCAAGTTGTTCATTTTGAGTACCGTACTCCTGTTTTGCACGATCCAATTGCTTCTGTGGAAGAAAAGGACAATTGGGACGAGGTTCAACTTCAGATGAGGCTTGCTTATTTGCTCTTTGCTAAACAACAAAGTCTTGATGTCATCTCTAGTAAAGTATCATCTAGTAGATTAAAGGAGGCAAGGGAATTCTCCTTAAAGACGTCATTTATTTCCAATACTTGGCAATACTTAATGAAGTCAACTTTAGATCACAAAATTCCATTTTCGCAAGCAAAAGATGACCTGTTTCGAATTGCATTGAAAAACAGATTAAAGGAATGGCTTTTGGAAAAAATTGTTTTAGGATGTAAGATTACTGAATATGATGCACAAGGGCAAAGTGTCATCCATTTGTGTGTAATTTTGGGATATACATGGGCGGTTACTTTATTTTCATGGTCAGGCTTGTCGCTAGATTTCCGGGATAAATTTGGATGGACTGCTCTTCATTGGGCCGCATATTATGGCAGGGAGAAAATGGTTGCAACTTTATTATCAGCCGGGGCAAAGCCAAATTTGGTCACAGATCCAACTCACCAAAACCCTGGTGGATGTACTGCCGCCGATCTTGCTCACACGAGGGGTTATCATGGTTTAGCAGCTTATCTTTCGGAAAAGTCTCTAGTTGAGCAGTTCAATGACATGAGCTTGGCTGGAAATATCAGTGGCTCACTGGAAACTAGCACGGATGAACCAGTAAATACCGAGAACCTTACCGAGGAGCAGCTCTACCTGAAAGATACATTGGCAGCTTACCGGACAGCTGCTGATGCAGCTGCACGCATACAAGAAGCATATAGGCAGCATTCTTTAAAATTACGAACGGAGGCGGTTGAGTTTTCCAGCCCAGAAGCCGAAGCACGCAAAATAGTTGCAGCAATGAAGATTCAGCACGCCTTCCGCAATTTTGAGACCAAGAAAGTCATGGCTGCTGCTGCTCGCATACAATATAGATTCCGTACATGGAAGATTCGTAAAGATTTCCTCAACATGCGTCGTCAAGTTATCAAGATTCAAGCTGCTTTCCGATGCTTTCAACAACGGAAACATTATTGTAAAATTCTTTGGTCAGTTGGTGTTGTTGAGAAAGCAGTGCTACGTTGGCGTTTAAAGAGAAAAGGCTTCCGTGGGCTCCAGCTTAATACCGCAGAAGCAGAGGAAAATCAGAATCAGCAAAGTGATGCAGAAGAAGAATTCTTTAGAACTGGTAGGAAACAAGCTCAAGAACGCGTTGAGAGAAGTGTAATACGAGTGCAGGCTATGTTCCGTTCTAAGAAAGTGCAAGAAGATTACAGGAGGATGAAGTTGGCACTTAAACAAGCAAAGATGGAACGGGAATTCGAAGAGGTGATTAGTACTGAAGTTGACATGGGAATGAAGAGATAG 2808 0.4156 MDNNLLGQQLVGSDIHGFHTLQELDVASIMEEARTRWLRPNEIHAMLCNRKYFTINVKPMNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKSLEHIVLVHYRETREVCLQGSPITPVNSNSTSASDPTAPWILSEEIDSGTKTAYAGDINNNITVKSHELRLHELNTLEWDELVVTNDLNASTVPNGGKNPYFDQQNQILPNDSFSNAASNASTEVRSFNISTQPIPGSYSVPFNFSEGVTLQTIDNQGNQNESRNHPIPSSGIDSFNTLVNDRLPVSSSGVDSLNTLINDRLQSQDSLGMWVNPIMSGSPCSVDDSALGSSVSSVVDNQQLPLPEQIFNLTDVFPAWVYSTEKSKVLVTGLFQIDYQHLSKSNLTCVCGDEVVPAEIVQDGVYRCWVPPHTPGFVNLYLSLDGHNPISQVVHFEYRTPVLHDPIASVEEKDNWDEVQLQMRLAYLLFAKQQSLDVISSKVSSSRLKEAREFSLKTSFISNTWQYLMKSTLDHKIPFSQAKDDLFRIALKNRLKEWLLEKIVLGCKITEYDAQGQSVIHLCVILGYTWAVTLFSWSGLSLDFRDKFGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPTHQNPGGCTAADLAHTRGYHGLAAYLSEKSLVEQFNDMSLAGNISGSLETSTDEPVNTENLTEEQLYLKDTLAAYRTAADAAARIQEAYRQHSLKLRTEAVEFSSPEAEARKIVAAMKIQHAFRNFETKKVMAAAARIQYRFRTWKIRKDFLNMRRQVIKIQAAFRCFQQRKHYCKILWSVGVVEKAVLRWRLKRKGFRGLQLNTAEAEENQNQQSDAEEEFFRTGRKQAQERVERSVIRVQAMFRSKKVQEDYRRMKLALKQAKMEREFEEVISTEVDMGMKR 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04024 935 Coils Coil 898 918 - -
Vifa4g04024 935 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 725 832 IPR027417 -
Vifa4g04024 935 Gene3D Immunoglobulins 377 472 IPR013783 -
Vifa4g04024 935 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Vifa4g04024 935 ProSiteProfiles IQ motif profile. 783 811 IPR000048 GO:0005515
Vifa4g04024 935 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 25 915 - -
Vifa4g04024 935 FunFam calmodulin-binding transcription activator 5 548 688 - -
Vifa4g04024 935 ProSiteProfiles Ankyrin repeat region circular profile. 618 646 - -
Vifa4g04024 935 SMART CG_1_2 29 147 IPR005559 GO:0003677
Vifa4g04024 935 Coils Coil 852 872 - -
Vifa4g04024 935 SMART ANK_2a 618 647 IPR002110 GO:0005515
Vifa4g04024 935 Pfam Ankyrin repeats (3 copies) 566 647 IPR002110 GO:0005515
Vifa4g04024 935 Gene3D - 779 829 - -
Vifa4g04024 935 SUPERFAMILY Ankyrin repeat 558 680 IPR036770 -
Vifa4g04024 935 ProSiteProfiles Ankyrin repeat profile. 618 650 IPR002110 GO:0005515
Vifa4g04024 935 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Vifa4g04024 935 Pfam IQ calmodulin-binding motif 807 825 IPR000048 GO:0005515
Vifa4g04024 935 SUPERFAMILY E set domains 382 469 IPR014756 -
Vifa4g04024 935 Gene3D - 545 687 IPR036770 -
Vifa4g04024 935 SMART iq_5 804 826 IPR000048 GO:0005515
Vifa4g04024 935 SMART iq_5 884 906 IPR000048 GO:0005515
Vifa4g04024 935 SMART iq_5 781 803 IPR000048 GO:0005515
Vifa4g04024 935 Pfam IPT/TIG domain 383 468 IPR002909 -
Vifa4g04024 935 ProSiteProfiles IQ motif profile. 886 914 IPR000048 GO:0005515
Vifa4g04024 935 ProSiteProfiles IQ motif profile. 805 829 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04024 Vifa-Chr4 1286382436 1286390049 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04024 29 918 CAMTA Transcription Factor Family AT3G16940 53.104 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vifa4g04024 CG-1 8.7e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04024 K21596 - gmx:100793970 1437.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04024 4 1286382436 1286390049 Vifa4g04024 4 1286382436 1286390049 ECH