Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04018 ATGTCGCTTCGACCAAATGCAAGAACCGATGCTCGCCGTAACCGCTACAAGGTCGCCGTCGACGCCACCGACGGTCGCCGGAGACGCGAAGACAACATGATCGAGATTCGCAAGAGCAAACGCGAAGAAAGCTTGCAGAAGAAGCGTCGCGAAGGCCTTCAATCTCAGGAGCAGTTTCTCACTCCTTATCAAACTTCCACTCTCGGCAAGAAGCTAGAGAGTCTTCCTTCAATGGCGGCTGGCGTCTTTTCGGACGACCGTAGTGCTCAACTGGAAGCCACCATACTGTTTCGGAAGCTACTTTCAACGGAACGGAATCCTCCGATTGAGAATGTTATTCAATCTGGTGTTGTGCCGCGTTTGGTTGAGTTTCTTTCCAGGGAGGATTTCCATCAACTCCAGTTTGAGGCTGCATGGACTCTGACAAACATAGCTTCCGGAACATCTGAGAACACTAAAGTGGTGGTTGATCATGGAGCAGTTCCTGCATTTGTCGCGTTGCTTAGGTCACCTATGGATGAAGTTCGAGAGCAGGCCGTGTGGGCTTTGGGAAATATTGCTGGTGACTCCCCCGGGGGTCGCAATCTTGTGCTTGGTCATGGTGCTCTTATCTCACTATTAGCCCATATGAACGAGCACGCCAAAATTTCAATGCTGAGAAATGCCACATGGACTTTATCAAACTTATGTAGGGGAAAGCCACAACCTCCATTTGAGCTGGTGAGACCAGCTCTTCCAGTTCTTGGGCGTTTGCTTTTGTCGAATGATGAAGAAATTTTGACAGATGCTTGCTGGGCTTTATCATACCTTTCTGATGACTCAAATGATAAAATACAAGAAATTATTGATGCTGGTGTATGTGGCCGACTGGCGCAGCTCCTTCAACACCCGTCTCCTTCAGTGTTGGTTCCTGTTGTTCGTACAGTGGGAAATATCGTGACTGGAGATGATATGCAGACTCAGGTGATGGTCAATTACGGTGCACTCCCTTGCCTTTTGAACCTATTGTTACAACCTCATAAAAAAAGCATCAAGAAAGAAGCTTGTTGGGCTATATCCAACATTACAGCTGGAAATAAAGAACAAGTACAGGCTGTTATTGAAGTTGGTCTTATTCCTCCGCTTGTGAGTCTTCTTCAAAATGCAGATTTTGACCTAAAAAGAGAAGCTGCTTGGGCAACAACAAATGCTACAGCTGGTGGAACTCTTGTGCAGATCAAGTACTTGGTGGATCAGGGTTGCATAAAACCACTATGTGATTTGCTTGTCTGCCCCGATCCAAAAATTGTCGCGGTCTGTTTAGAGGGCCTAGAGAACATTTTGATTGCTGGAAAAGCAGAGAATAGTCAAGGTAACTCTGAAGATGCCAACTTGTATGCTCAGATGATAGAGGATTCCGAGGGATTGGAGAAGATTGAAAGCCTGCAGAATCACGACAACGATGAAATATATGAGAAGGCTGTTAAACTTCTTGAAACATACTGGTGCGAAGAGGAAAATGAGATACTACCATCAGGCCATGGTGATCAATCTGGTTTCAACTTTGCAAGCAAAGAGCCTTCATTACCACCTGGTGGATTCAACTTCAGTTGA 1593 0.4608 MSLRPNARTDARRNRYKVAVDATDGRRRREDNMIEIRKSKREESLQKKRREGLQSQEQFLTPYQTSTLGKKLESLPSMAAGVFSDDRSAQLEATILFRKLLSTERNPPIENVIQSGVVPRLVEFLSREDFHQLQFEAAWTLTNIASGTSENTKVVVDHGAVPAFVALLRSPMDEVREQAVWALGNIAGDSPGGRNLVLGHGALISLLAHMNEHAKISMLRNATWTLSNLCRGKPQPPFELVRPALPVLGRLLLSNDEEILTDACWALSYLSDDSNDKIQEIIDAGVCGRLAQLLQHPSPSVLVPVVRTVGNIVTGDDMQTQVMVNYGALPCLLNLLLQPHKKSIKKEACWAISNITAGNKEQVQAVIEVGLIPPLVSLLQNADFDLKREAAWATTNATAGGTLVQIKYLVDQGCIKPLCDLLVCPDPKIVAVCLEGLENILIAGKAENSQGNSEDANLYAQMIEDSEGLEKIESLQNHDNDEIYEKAVKLLETYWCEEENEILPSGHGDQSGFNFASKEPSLPPGGFNFS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04018 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Vifa4g04018 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
Vifa4g04018 530 SMART arm_5 316 357 IPR000225 GO:0005515
Vifa4g04018 530 SMART arm_5 274 314 IPR000225 GO:0005515
Vifa4g04018 530 SMART arm_5 401 442 IPR000225 GO:0005515
Vifa4g04018 530 SMART arm_5 148 188 IPR000225 GO:0005515
Vifa4g04018 530 SMART arm_5 105 146 IPR000225 GO:0005515
Vifa4g04018 530 SMART arm_5 189 231 IPR000225 GO:0005515
Vifa4g04018 530 SMART arm_5 233 272 IPR000225 GO:0005515
Vifa4g04018 530 SMART arm_5 359 399 IPR000225 GO:0005515
Vifa4g04018 530 MobiDBLite consensus disorder prediction 507 530 - -
Vifa4g04018 530 Pfam Armadillo/beta-catenin-like repeat 240 271 IPR000225 GO:0005515
Vifa4g04018 530 Pfam Armadillo/beta-catenin-like repeat 317 357 IPR000225 GO:0005515
Vifa4g04018 530 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Vifa4g04018 530 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Vifa4g04018 530 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Vifa4g04018 530 Pfam Armadillo/beta-catenin-like repeat 274 313 IPR000225 GO:0005515
Vifa4g04018 530 Pfam Armadillo/beta-catenin-like repeat 405 440 IPR000225 GO:0005515
Vifa4g04018 530 Pfam Armadillo/beta-catenin-like repeat 191 231 IPR000225 GO:0005515
Vifa4g04018 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Vifa4g04018 530 PANTHER IMPORTIN ALPHA 12 500 - -
Vifa4g04018 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 398 IPR000225 GO:0005515
Vifa4g04018 530 FunFam Importin subunit alpha 73 496 - -
Vifa4g04018 530 PIRSF Importin_alpha 2 529 IPR024931 GO:0005737|GO:0006606|GO:0061608
Vifa4g04018 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 370 IPR000225 GO:0005515
Vifa4g04018 530 SUPERFAMILY ARM repeat 5 499 IPR016024 -
Vifa4g04018 530 Pfam Atypical Arm repeat 457 501 IPR032413 -
Vifa4g04018 530 FunFam Importin subunit alpha 11 50 - -
Vifa4g04018 530 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Vifa4g04018 530 Gene3D - 73 496 IPR011989 -
Vifa4g04018 530 Gene3D - 10 50 IPR036975 GO:0006606
Vifa4g04018 530 Pfam Importin beta binding domain 12 94 IPR002652 GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04018 Vifa-Chr4 1284004509 1284007099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04018 134 391 U-box Gene Family AT3G46510 23.643 2.94e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04018 K15042 - gmx:100792804 814.683