Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04014 ATGATCTCGCAACTACGAAGTTATCACTGTATTTTCACCTTCGTCGTTTTAGCAACAATCCTACTTTCAACGACGTCGTTTACCGATGCTCAAACCTGCAACGGCATACTCATCTCCTACGCCGCCGGAACCGGAGTACGCCTCCCGCCGAACGTCACCAACCCCAAGAAACAACCGTACCGATTCGAATCGACGTTGACCGTGCTCAACAACGGTCTCGATGAGCTCAAGTCATGGAAGGTCTTCGTCGGATTTCAGCACGACGAGTTTCTGGTTTCTGCTTCCGGTGCCGTCCTCGCTGACGGCACCACTCTCCCTGCCGCCGTCGGGAATGGTAGTTTGTTCGCTGGATATCCAATGACCGATCTCAAGACTGCTGTTGAAACTGCCGGTGACTTGACTCAGATGCAGGCTCAGATCAACCTCGTTGGCACCGTCTTTGGAGTGGCGCCGCCTAATGTTCCTTTGCCGTCTTCTATCAACCTCGCAAACGATGGATTCATCTGCGGCAAAGCCACCGCTCAAGACATGAATGGGACTAATGTGTGTTGCACAAGAGATCCGAAGTTCAAAACAAACATCACTACTGATGAGAAGTTTCTGCCTCGTCAAGATGGTGATCTTACTATTATGTATGATGTGATTCGATCTTATGATTCGAATTATTGGGCCGAGGTGCTTATCCGTCCGTTGTCGATGCTTCTGATTGTATTTTCGGTAAGCAAGTCCATGGATCCTAGTAAGTCGGTTTCGAGATTCCAGATGCAAGTGTACAAGATGCCGCCGATGCTTAACCGATCTGAGCTTTCTCCGCCGCAGAACTGGAAGATTAGTGGTTCGCTTAATCCGGACTATAAATGCGGTCCTCCAATTCGTGTTAGCCCTACTGCGAATCCTGATCCGACAGGGTTGCCGTTAAACAAAACTGTAATGGCGAGTTGGCAGGTTGTGTGTAACATAACAACAGCCAAGGGGACATCAAGTAAATGCTGTGTTTCGTTTTCAGCTTACTACAATGAATCAGTTATTCCATGCAAAACATGTGCATGTGGATGCGCCGAAAATGTGGGAAATACGTGTAGTACAACTGCACCTGCTATGTGGCTTCCGTCGGACGCACTACTTGTTCCTTTCGACAACCGAAGTGCCAAGGCTAAAGCATGGGCGGATCTAAAACATCTACCAAGGCCAAATCCAATGCCTTGCAGTGATAACTGTGACTGGTTTGCTGCTGTGCAAATGGACAAAGCTACTGCAGGTTTTGAGAAAATGTATTCATTCAACGGTAGCGCCATAGAAATAAACGGCGTGAATAATACAATAATAATGCAAGGTTTGGAGGGGTTGAACTATCTTGTTGGAGAAACAGATGGAGCTGACCCTCGGAGAGATCCCAGGGTGCCCGGCAAACAACAGTCAGTAATGTCGTTCACAAAGAAAACTACTCCTGGAATCAGTGTCGTTCACGGTGATGGGTTTCCCACGAAAGTGTTCTTCAATGGGGAGGAATGTTCTCTTCCTTCTGTGTTTCCAACCAGTAGTGCTTCAAAGAAGGAATTTTCCTTTGCTAATTTGATACTTCTACCATTGTTGTTAGCTGTCTTCATGTGGTAA 1614 0.4727 MISQLRSYHCIFTFVVLATILLSTTSFTDAQTCNGILISYAAGTGVRLPPNVTNPKKQPYRFESTLTVLNNGLDELKSWKVFVGFQHDEFLVSASGAVLADGTTLPAAVGNGSLFAGYPMTDLKTAVETAGDLTQMQAQINLVGTVFGVAPPNVPLPSSINLANDGFICGKATAQDMNGTNVCCTRDPKFKTNITTDEKFLPRQDGDLTIMYDVIRSYDSNYWAEVLIRPLSMLLIVFSVSKSMDPSKSVSRFQMQVYKMPPMLNRSELSPPQNWKISGSLNPDYKCGPPIRVSPTANPDPTGLPLNKTVMASWQVVCNITTAKGTSSKCCVSFSAYYNESVIPCKTCACGCAENVGNTCSTTAPAMWLPSDALLVPFDNRSAKAKAWADLKHLPRPNPMPCSDNCDWFAAVQMDKATAGFEKMYSFNGSAIEINGVNNTIIMQGLEGLNYLVGETDGADPRRDPRVPGKQQSVMSFTKKTTPGISVVHGDGFPTKVFFNGEECSLPSVFPTSSASKKEFSFANLILLPLLLAVFMW 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04014 537 Pfam COBRA-like protein 241 321 IPR006918 GO:0010215|GO:0016020
Vifa4g04014 537 PANTHER COBRA-LIKE PROTEIN 7 27 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04014 Vifa-Chr4 1282093888 1282095982 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04014 242 519 COBRA Gene Family AT4G16120 61.290 1.06e-129 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04014 - - gmx:100814396 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04014 4 1282093888 1282095982 Vifa4g04014 4 1282093888 1282095982 ECH