Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04013 ATGAATCTTACTAACGGTAAAGGATCCATTTCTACGGTTACTACTACGACTGTTTCTATGAAATCCGGCGAAGGTTCCGATCAGTTTCCGGCGGGTCTCCGAGTTCTTGTTGTGGATGATGATCCCACGTGTCTGAAAATCCTCGAGAAGATGCTAAGGTCGTGTTATTATGAAGTTACGCAGTGCAATCGAGCCGAAGCTGCACTTTCGCTACTCAGGGAGAACAAGAATGGATTTGACATTGTTATCAGTGATGTCCATATGCCAGACATGGATGGATTTAAGCTCTTGGAACACATTGGATTGGAAATGGATCTTCCGGTTATTATGATGTCCGCGGATGATGGTAAAAATGTTGTTATGAAGGGTGTGACACACGGTGCTTGTGATTACCTGATTAAACCGGTTCGTATGGAGGCTTTGAAGAACATATGGCAACATGTGGTTCGGAAGAAGAAAAATGACTGGAAAGATTCGGAACAATCGGGTAGTGCTGATGAAGGAGATCGACATCCAAAGGCGTCTGATGATGCTGATTATTCGTCTTCTGCTAATGAAAGTAATTGGAGAAGCTCGAGAAAGAGAAGGGATGATGAAGAGGATGGCGATGATAGAGATGACTCATCCACACTAAAGAAGCCCCGGGTTGTTTGGTCTGTCGAGCTCCATCAACAGTTTGTGGCTGCTGTCGATCAACTAGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACCCGAGAAAATGTTGCTAGCCACCTGCAGAAATATCGATTGTATCTTCGAAGGTTAAGTGGAGTTTCTCAGCACCAGAACAACTCATTTCTCAGCCCGCAAGAGGCGTCATTTGGGACAATTTCTTCAATGAATGGTCTTGATCTGCAAACTCTTGCAGCTGCAGGCCAGCTCCCAGCACAGAGTTTAGCCACTCTTCAAGCTGCAGGACTCGGTAGGTCAGCTGTGAAATCAGGCTTAGCTATGCCTCTCATGGATCAAAGAAACCTTTTCAGTTTCGAAAACCCGAGGTTGAGATTTGGAGAAGGGCAGCAACAACTTTTGAGCAATAATAAAACAAATCTTCTTCACGGAGTTCCAACTAACATGGAGCCTAAGCAGCTTGCCAATTTGCACCAGTCTGCAGCTCAATCCCTTGGCAACTTGAATATGCGAGTCCCTGGTTCGTCAACACAGGGAAATCCCTTATTGATGCAGATGCCACAACAATCCCAACCTAGAGGTCAGATGCTAAGTGAAAATATCAGTCCCCGTATTCCCAGACTACCAAACCTCTTGGGGCAGTCTACTGTATCAAATGGAATTTCCGACGGTCTTTTAGGGAGAAACGGCATAGCTAGTAGCAGCAGAGGGCCTTCATTTAATTCTGTTCAACAGAGCTCTATGTTTTTTAATTCTCCCATGAATCAAAGCACTGAAATGTCTGTTACTAATTTTCCTCTCGGAAGCACTCCAGGTATATCTAGTATCACAACCAAAGGCACATTTCAACCCGAAGTTAATTCGGGTATTAAAGGATCAGCTGGATTTCCAAGTTATGATATTTTTAACGAACTGAACCATCAGAAGCCTCGGGATTGGGGAATGACAAACCCCGGTCTAACATATGATTCCTCGCAGCATGCAAATCCTTTACATGGTAACATCGATGTCTCGCCATCAGTTTTAGTTCATCAGGGTTATTCTTCTACGCCACAAAATGGACATAACAGAGATAACTCTTTGATTGGAAAATCTCCATTTTCTCTTGGAGAAAGCTCGGAACAAGGTCATTTCCAAAATGGCGTTCAAAACTTCAATCCCCTTGTTGAAAATTCAACAAGGGTTATTAAGTCTGAAATAGTTCCAGACGCGAGCTCCCAGACTAGTCTCTTCCCCGATCATTACGGACAGGAGGATCTTATGAGTGTACTTCTGAAACAGCAGGAAGGCATTGTACAAGGCGAGAATGAGTTTGACTTCGACGGATATTCTCTGGACAACATTCCTGTCTAG 2031 0.4392 MNLTNGKGSISTVTTTTVSMKSGEGSDQFPAGLRVLVVDDDPTCLKILEKMLRSCYYEVTQCNRAEAALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRMEALKNIWQHVVRKKKNDWKDSEQSGSADEGDRHPKASDDADYSSSANESNWRSSRKRRDDEEDGDDRDDSSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNSFLSPQEASFGTISSMNGLDLQTLAAAGQLPAQSLATLQAAGLGRSAVKSGLAMPLMDQRNLFSFENPRLRFGEGQQQLLSNNKTNLLHGVPTNMEPKQLANLHQSAAQSLGNLNMRVPGSSTQGNPLLMQMPQQSQPRGQMLSENISPRIPRLPNLLGQSTVSNGISDGLLGRNGIASSSRGPSFNSVQQSSMFFNSPMNQSTEMSVTNFPLGSTPGISSITTKGTFQPEVNSGIKGSAGFPSYDIFNELNHQKPRDWGMTNPGLTYDSSQHANPLHGNIDVSPSVLVHQGYSSTPQNGHNRDNSLIGKSPFSLGESSEQGHFQNGVQNFNPLVENSTRVIKSEIVPDASSQTSLFPDHYGQEDLMSVLLKQQEGIVQGENEFDFDGYSLDNIPV 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04013 676 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Vifa4g04013 676 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Vifa4g04013 676 Gene3D - 210 272 - -
Vifa4g04013 676 SMART REC_2 33 145 IPR001789 GO:0000160
Vifa4g04013 676 FunFam Two-component response regulator 33 170 - -
Vifa4g04013 676 SUPERFAMILY CheY-like 32 152 IPR011006 -
Vifa4g04013 676 CDD REC_typeB_ARR-like 35 149 - -
Vifa4g04013 676 MobiDBLite consensus disorder prediction 189 210 - -
Vifa4g04013 676 FunFam Two-component response regulator 209 272 - -
Vifa4g04013 676 Gene3D - 33 206 - -
Vifa4g04013 676 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Vifa4g04013 676 MobiDBLite consensus disorder prediction 153 177 - -
Vifa4g04013 676 MobiDBLite consensus disorder prediction 573 601 - -
Vifa4g04013 676 PIRSF RR_ARR_type-B 15 668 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vifa4g04013 676 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 379 IPR045279 GO:0009736
Vifa4g04013 676 MobiDBLite consensus disorder prediction 153 210 - -
Vifa4g04013 676 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Vifa4g04013 676 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Vifa4g04013 676 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04013 Vifa-Chr4 1282089303 1282092429 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04013 68 676 Response Regulator Gene Family AT3G16857 51.455 1.68e-180 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vifa4g04013 Response_reg 7.6e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04013 - K14491 gmx:100814930 1039.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04013 4 1282089303 1282092429 Vifa4g04013 4 1282089303 1282092429 ECH