Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03996 ATGGCTTCAGCACACATCAGAGACATTCTAACAGCTTTCAATCCTTCTCTCGACTTCTTCGCCATAACCACCGGCGACGGTCGCATTAAGATATGGGATACACTCAAGGCTCAACTTCAGACCGAGTTCGCGGATTTCACTTCAACCCGTGATACTAATTTATTTGATACAAAAGGACATCTCTCTGTTGATTACACATGTATCAAGTGGTTGTCTTTTGAAAGAAAGAAGAAAAGGAAACATTCTTCCTCTCTGTTGCTGCTTGGAACTGGTAGTGGTGATGTTTTAGCACTTGATGTTTCTGCTGGTCAATTGTCTTGGAAAATTAATGATTGTCATCCTGGAGGTGTCAGGGCCATTTCGTCTTTGGCAAACGGATCGACCTTTTATACTTCAGGTGTGGATGGAATGATATGTGCAATAGATTTCACGACAGGAAACTTGTTGGAGAAGTTTAAAGCTTCTTCGAAGGCTGTAACTTCTATATCGGTTTCTCCGGATGGCAAGAAATTAGCTACTGCAGCAGCACAATTGAAGATTTTTAACTGTTCTAATAAAAAAAAGATTGAAAAATTCTCTGGTCATCCTGGATCTGTCCGGTGTATGGTCTTCACCGAAGATGGCAAGTATATCCTTTCGACTGCCGCTGCTGAAAGATATGTTGCTGTTTGGAAATTAGATGGCGCTAAAAAGCAGTCTGTCAGTTGTGTTCTTGCAATGGAGCACCCTGCTGTCTTTCTTGATAGCAGGCTCATTGATAAAGGAGAACATGATGAGGCTGGCTTATGTGTTTTAGCCATATCAGAAGTTGGTGTTTGTTATTTATGGTTTGGAAATAGTATTGAAGAACTAAGAAATGCAAAACCCACGAAAATATCATTGTCATTGGAAGATATGTCCACCAAAAATTACAAAGGCGCACTCCCTGCAATATATGCTGCAAAATTACAAAGCACCCAGAAGCCCGCCTCTGGGCAGGTTTTTCTTGTTTCTGGAATGCTTGTAAAACCATCTTTTCAAAATATTCTATTGCACTCTGGTACAGACGTGAAGTTGAGTGTCTCTCGTGATGGCATTCTTCTTCCAATGAGTCAATCTCTTATCAAATCTAAGAAGAGGACTGATGTACAAAGAGTAACTGCACTAGATCGTGCTAATGCCGAGGATGCCTTGCTTCCAATTCCTAAAGTTTTTGATTCTCATGAGAAAGATAAATCATTTCAAGTCACTTCAGACAAGGATGTAAAGGACGATTTGCTTGCAAGTGGTACTGATTCCATGGAAATAGATGATGGTATTGTCCAAAGTGAGACTGATGTAATTAGCATGGAGGACCGGATGAGATCATTAGGATTGCTTTACAGTGAGAGTGATTGTTCATCAAATTTTGAACTTTTTTCTAAATTGTTAAAGGGTATTGATCTGGAAGCTACTCTTCCAAAGAAAAAGGTAAGAGCGGCTGTTTTGTCTATGGAACCAAGTGAAGCATTCAAGCTACTAGAAGTATTGCTGGTTATATGGCAATCAAGGTCATCTAGCAGGGAGTCCGTGCTTCCATGGATGTACAGCATAGTTGTTACTCATGGTCATAGTGCTGCTGAAGAATCTGCAACACATATGTTTGATTCGGTGCACAAGATTACCAATTCCAGAGCGGCAGCTCTTCAGTCTTTGTTACAACTATCAGGTCGACTACAATTGGTTACATCGCAGATTGATAAGGCTTCTCAGAAAATAAGCCATCCGATGAATGATCTCCAATCAGAAGAAAGTGAAGACGAGGATGAATATTATCACGAGGATGACGACAATGAAGAAGATGATGCATCCGAAATAAGTACTGATGATGAAAACTAG 1857 0.4033 MASAHIRDILTAFNPSLDFFAITTGDGRIKIWDTLKAQLQTEFADFTSTRDTNLFDTKGHLSVDYTCIKWLSFERKKKRKHSSSLLLLGTGSGDVLALDVSAGQLSWKINDCHPGGVRAISSLANGSTFYTSGVDGMICAIDFTTGNLLEKFKASSKAVTSISVSPDGKKLATAAAQLKIFNCSNKKKIEKFSGHPGSVRCMVFTEDGKYILSTAAAERYVAVWKLDGAKKQSVSCVLAMEHPAVFLDSRLIDKGEHDEAGLCVLAISEVGVCYLWFGNSIEELRNAKPTKISLSLEDMSTKNYKGALPAIYAAKLQSTQKPASGQVFLVSGMLVKPSFQNILLHSGTDVKLSVSRDGILLPMSQSLIKSKKRTDVQRVTALDRANAEDALLPIPKVFDSHEKDKSFQVTSDKDVKDDLLASGTDSMEIDDGIVQSETDVISMEDRMRSLGLLYSESDCSSNFELFSKLLKGIDLEATLPKKKVRAAVLSMEPSEAFKLLEVLLVIWQSRSSSRESVLPWMYSIVVTHGHSAAEESATHMFDSVHKITNSRAAALQSLLQLSGRLQLVTSQIDKASQKISHPMNDLQSEESEDEDEYYHEDDDNEEDDASEISTDDEN 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03996 618 Pfam WD domain, G-beta repeat 4 33 IPR001680 GO:0005515
Vifa4g03996 618 Pfam WD domain, G-beta repeat 188 225 IPR001680 GO:0005515
Vifa4g03996 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 234 IPR001680 GO:0005515
Vifa4g03996 618 MobiDBLite consensus disorder prediction 588 618 - -
Vifa4g03996 618 PANTHER OS03G0300300 PROTEIN 3 616 - -
Vifa4g03996 618 SUPERFAMILY WD40 repeat-like 12 234 IPR036322 GO:0005515
Vifa4g03996 618 SMART WD40_4 2 33 IPR001680 GO:0005515
Vifa4g03996 618 SMART WD40_4 145 182 IPR001680 GO:0005515
Vifa4g03996 618 SMART WD40_4 102 142 IPR001680 GO:0005515
Vifa4g03996 618 SMART WD40_4 185 225 IPR001680 GO:0005515
Vifa4g03996 618 Pfam Dip2/Utp12 Family 479 569 IPR007148 -
Vifa4g03996 618 Gene3D - 141 249 IPR015943 GO:0005515
Vifa4g03996 618 Gene3D - 3 140 IPR015943 GO:0005515
Vifa4g03996 618 MobiDBLite consensus disorder prediction 574 618 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03996 107 226 U-box Gene Family AT2G33340 34.677 4.82e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03996 K14546 - gmx:100815458 852.432