Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03992 ATGGGACAAGAATCAGATTCCAAAGCCAGGTTGGTGTTAGAGATTTGTTCCATTTCCACACGTTCCGCAACATGTGTTCATACCATTCTTTCAAACCCAACCAAAACAACTTTCATTGACTGGTATTGCATTCTTGGAGTAGAAGAAAATGCAGGGGTGAATGTCATTCGCAAGAGATACCGAAAACTGGCTTTGCAGCTTCACCCAGATAAGAACAAACATCCAAAGGCTGAAATTGCCTTCAAGCTTGTTTCTGAGGCAAATGCATGTCTAACTAATGCAGCAAAGAGAGAAGCTTTTGATTTTGCGAGGTACAAGCATTTCTGCATTGAATGCAAGAAAATTCCATATACAACTACAGACAATGTTTCTGGAAATTCCAATGGTTCAAGTTTTTCGGCATGGAATATTATCACAAGGTCAAGATCTTCAAAGTTTTGGAGAAATATTAGGGATATTAGAGAGAGATTTAAGGAAGAGGCTAATGTGATTGAGAATTGTTTGAGAGTAAATTCAATGTCAAGGACAGAATCTCCACTCTACAATCCTGATAGTTATCTAGATAGAAGAAGCAAGTCACAAGCACAGCATAGATTTGAGAAAGAAACCCCTATTTTCAATCCTTCAGATTACTCATACCAAGATTATCCTCATATGAGAAGCCATGTTAACAAGAATTCTTCCACATTTTGGTATTTGCAGACAAATAGTATGCTGAACAACGAAAAGAGAGGACAGCTTAGCTCCCCTGTTTTTGAGGTCAAAAGTAGGAGTATGTTTACCAACCAATTTGCTTTTGTACCATCAAGATATTAG 816 0.3775 MGQESDSKARLVLEICSISTRSATCVHTILSNPTKTTFIDWYCILGVEENAGVNVIRKRYRKLALQLHPDKNKHPKAEIAFKLVSEANACLTNAAKREAFDFARYKHFCIECKKIPYTTTDNVSGNSNGSSFSAWNIITRSRSSKFWRNIRDIRERFKEEANVIENCLRVNSMSRTESPLYNPDSYLDRRSKSQAQHRFEKETPIFNPSDYSYQDYPHMRSHVNKNSSTFWYLQTNSMLNNEKRGQLSSPVFEVKSRSMFTNQFAFVPSRY 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03992 271 PRINTS DnaJ domain signature 76 96 IPR001623 -
Vifa4g03992 271 PRINTS DnaJ domain signature 60 75 IPR001623 -
Vifa4g03992 271 PRINTS DnaJ domain signature 42 60 IPR001623 -
Vifa4g03992 271 Pfam DnaJ domain 40 101 IPR001623 -
Vifa4g03992 271 ProSitePatterns Nt-dnaJ domain signature. 81 100 IPR018253 -
Vifa4g03992 271 ProSiteProfiles dnaJ domain profile. 40 104 IPR001623 -
Vifa4g03992 271 CDD DnaJ 40 87 IPR001623 -
Vifa4g03992 271 SMART dnaj_3 39 96 IPR001623 -
Vifa4g03992 271 Gene3D DnaJ domain 39 166 IPR036869 -
Vifa4g03992 271 PANTHER BNAC03G44070D PROTEIN 8 232 - -
Vifa4g03992 271 SUPERFAMILY Chaperone J-domain 28 105 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03992 Vifa-Chr4 1275740189 1275741179 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03992 40 101 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 42.424 1.34e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03992 - - gmx:100801809 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03992 4 1275740189 1275741179 Vifa4g03992 4 1275740189 1275741179 ECH