Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03986 ATGGTTAATTTCCCATCTTTTGTAAACGGATTGGCAAGAACTATGTCAATCAAGAAAGACAAGAATTTCCAAAAGGATGATGCAAGAAAAGCAGTGGAAGAATTGGCAAAAGAAGCAAGAAAGAATGAATTGTTATTGAGTTCTTCTGGAGTTGTTAAGTCCAACAAAGACAACAGTTTTGTTTCTGTTTTTACACATAGAGGCCAAAAAGGAGTCAACCAAGATCGTCTTATTGTTTGGGAGGAATTTGGTTGCCAACAAGATATGATGTTTTGTGGAGTTTTTGATGGACATGGTCCTTGGGGACACTTTGTAGCTAAAAGGGTGAGGAAATTAGTTCCATCCCTTTTGCTATGCAATTGGCAACAAAATCTTGCTGCAACATCAATTGAGTTAGATTTTAAAGTTGAAGAAAACAAAAATGCTCATGGATTGAATTTATGGGAACAATCCTACTTAAAGACTTTTGCTGCAGTTGACCAAGATCTAAAGCATCATCCTAGAATTGATTCTTTTCGAAGTGGCACTACAGCTTTGACAATGATCAAACAGGGTGAAAATCTTATTATAGCAAATGTGGGTGATTCAAGACTTGTGTTAGCAACTACTTCAGAAGATGGCACATTACTTGCACTTCAGCTTACCACTGACTTCAAACCAAATTTATCAAAGGAGGCAGAGAGGATTGAAAAATCAAAAGGGGTTGTATTTTGTATGAAAGATGAACCAGGTGTGTACAGAGTTTGGATGCCAAATGGTAAAACACCAGGATTAGCAATATCAAGAGCATTTGGTGACTATTGTATGAAAGAGTATGGTTTAATCTCTGTGCCAGAAGTGACACATAGAAAACTTACCACTAGGGATCAATTTATCATCTTAGCAACAGATGGGGTTTGGGATGTTGTATCAAACCAAGAGGCAGTGAAGATTGTTTGTAAATCGGCAGATAAAGAAAAAGCAAGTGAAAGGGTTGTGAAATATGCAATACGAGAATGGAAAAGAAAGAGAAGTGCCATTAAACTTATAGATTGA 1035 0.3671 MVNFPSFVNGLARTMSIKKDKNFQKDDARKAVEELAKEARKNELLLSSSGVVKSNKDNSFVSVFTHRGQKGVNQDRLIVWEEFGCQQDMMFCGVFDGHGPWGHFVAKRVRKLVPSLLLCNWQQNLAATSIELDFKVEENKNAHGLNLWEQSYLKTFAAVDQDLKHHPRIDSFRSGTTALTMIKQGENLIIANVGDSRLVLATTSEDGTLLALQLTTDFKPNLSKEAERIEKSKGVVFCMKDEPGVYRVWMPNGKTPGLAISRAFGDYCMKEYGLISVPEVTHRKLTTRDQFIILATDGVWDVVSNQEAVKIVCKSADKEKASERVVKYAIREWKRKRSAIKLID 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03986 344 Coils Coil 18 45 - -
Vifa4g03986 344 CDD PP2Cc 60 335 IPR001932 -
Vifa4g03986 344 Gene3D - 45 340 IPR036457 -
Vifa4g03986 344 PANTHER PROTEIN PHOSPHATASE 48 337 IPR015655 GO:0004722|GO:0006470
Vifa4g03986 344 SMART PP2C_4 51 342 IPR001932 -
Vifa4g03986 344 SUPERFAMILY PP2C-like 56 333 IPR036457 -
Vifa4g03986 344 ProSiteProfiles PPM-type phosphatase domain profile. 60 344 IPR001932 -
Vifa4g03986 344 Pfam Protein phosphatase 2C 86 332 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03986 Vifa-Chr4 1274564979 1274566656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03986 1 344 PP2C-type Phosphatase Gene Family AT3G05640 57.803 5.13e-153 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03986 - - gmx:100814087 565.459