Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03984 ATGAATTCCAATTACGGAAAACCAAATCCCCAAAAATCATCTTCCGTTTCTCTCAACAACTACAACTTCGATCTCGATCTCGGAATCGGATCCAACCGATCCAAATCCCTAAAAGATCAGAAAAACCCCAATCCTTCCTATTCCAATTCATACTCAACTCCTTCGTATTCATCGGCGCAACCTAAAAAAACGGCATGGACCCACCAACCCACCCAAACTCCGGCCGGGTTACCCGGCGCACCACCGTCAATGGTCGGAGATATCTTCGGGAAGAGCTGGGGATCTACTCAACCTTCCGGTCCTAGCATTGGAATTGTTAATAAAAACCCTAATCTGTTTGGAGATTTGGTAACCTCTGCTTTGGGTCAAGGTTCTTCTTCTTCGAATGTTCCTCTGAAAAATGTAACTCCGGCATCTAATAAATCGTCTTTTTCAATGTCGAATATGGCGAATTCTTTGCCGAAAAATTCGAATACGCCTCAAAGTGGTTCTACTTGGGGTTCATCATCTTCTGGGAGCTTTAATTTGAATGCTAATCAGAAACCTAATCTAGGAGGTCCTTCGATCCGAAGTGGCGTTGGTGTTGCTGCATCTGGTAGTGGAATTGGGATCAGTAACAAAGATCCTTTTAGTTCATTGGGTGGTTTTGGATCTAAGCCATCTTCTAGTCTTAATTCAGCTGCTAAACCTCAAAAGGTTGAATCAGAAGATGATGGGTTTGGTGATTTTCAGAATGCTTCAAAATCGAGCTCGAATGCGTTTCCATCGAGTGGTGGTAGTGTTGGAATTGATGTTGATTTTACTGGATCTTCGGCTTTTTCGAATAGGACGCCTCCTGTTCAAGCTTCTTCAGGTGGTGGTGGTGGTGGTGATCCGATGGATATGTTTTTTGCATCTTCAACTGCTTCTTCTGGAGGCAGTGGTGGTGGTTCTGGTGCTGCGGCGTCTTCGGAGATTGATGATTGGGGTACTGAGTTTGGAGGTGGAAACCATGATGTGGGTGGAACAACTACTGAACTTGACGGACTTCCACCTCCTCCTGCTGGGATATCGGGTTCTACTGCGAAAGGCAAAGGGATGGATAATTACAAACAGGGACAATTTGCTGATGCTATTAAATGGCTTTCATGGGCTCTCATCCTTTTGGAGAAAGCTGGAGATGGTGCTGGCACTGTGGAGGTTTTGTCATGCAGAGCTTCTTGTTACAAAGAAGTTGGAGAGTATAAAAAAGCAGTGGCGGATTGTACACAGGTTATTGGAAACAATGGAAAAAATGTAGCTGTCCTCGTTCAGCGTGCTCTCTTGTATGAAAGTATGGAAAAGTACAAACTTGGTGCTGAAGACCTGAGAACCGTGCTGAAGATTGATCCTACTAATAGGGTTGCTAGAAGTACTGTTCACCGGTTGGCTAAGATGGCTGAATAG 1425 0.4456 MNSNYGKPNPQKSSSVSLNNYNFDLDLGIGSNRSKSLKDQKNPNPSYSNSYSTPSYSSAQPKKTAWTHQPTQTPAGLPGAPPSMVGDIFGKSWGSTQPSGPSIGIVNKNPNLFGDLVTSALGQGSSSSNVPLKNVTPASNKSSFSMSNMANSLPKNSNTPQSGSTWGSSSSGSFNLNANQKPNLGGPSIRSGVGVAASGSGIGISNKDPFSSLGGFGSKPSSSLNSAAKPQKVESEDDGFGDFQNASKSSSNAFPSSGGSVGIDVDFTGSSAFSNRTPPVQASSGGGGGGDPMDMFFASSTASSGGSGGGSGAAASSEIDDWGTEFGGGNHDVGGTTTELDGLPPPPAGISGSTAKGKGMDNYKQGQFADAIKWLSWALILLEKAGDGAGTVEVLSCRASCYKEVGEYKKAVADCTQVIGNNGKNVAVLVQRALLYESMEKYKLGAEDLRTVLKIDPTNRVARSTVHRLAKMAE 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03984 474 SUPERFAMILY TPR-like 356 464 IPR011990 GO:0005515
Vifa4g03984 474 MobiDBLite consensus disorder prediction 124 186 - -
Vifa4g03984 474 PANTHER OS03G0340700 PROTEIN 1 474 - -
Vifa4g03984 474 MobiDBLite consensus disorder prediction 213 259 - -
Vifa4g03984 474 MobiDBLite consensus disorder prediction 242 259 - -
Vifa4g03984 474 MobiDBLite consensus disorder prediction 297 311 - -
Vifa4g03984 474 MobiDBLite consensus disorder prediction 124 187 - -
Vifa4g03984 474 SMART tpr_5 352 385 IPR019734 GO:0005515
Vifa4g03984 474 SMART tpr_5 426 459 IPR019734 GO:0005515
Vifa4g03984 474 SMART tpr_5 392 425 IPR019734 GO:0005515
Vifa4g03984 474 MobiDBLite consensus disorder prediction 213 230 - -
Vifa4g03984 474 MobiDBLite consensus disorder prediction 271 356 - -
Vifa4g03984 474 Gene3D Tetratricopeptide repeat domain 352 473 IPR011990 GO:0005515
Vifa4g03984 474 MobiDBLite consensus disorder prediction 28 74 - -
Vifa4g03984 474 MobiDBLite consensus disorder prediction 28 101 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03984 367 474 Calmodulin-binding Proteins AT3G25230 29.464 1.48e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03984 - - pvu:PHAVU_003G107800g 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03984 4 1274109282 1274112016 Vifa4g03984 4 1274109282 1274112016 ECH