Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03979 ATGGCAGCAGGAGCAATAGAAAACAAAAACCATGACCAAAAGAAGAAGTTCGCCGTTCTCGGCGTGTCTTCGATCTTACTTATAGCAATGGTAGCCGCGGTGGCCGTCGGTGTTTCCAATGGTGGAGACGCGGCTGAATTACTAGGAGGTGATGACAACAGAATTTCAAAATCACAAAAGAATGTTAAAGTACTTTGTGATGCAGCTGAGTACAAAAAAACCTGCGAGAACAGTCTTGCAAAAGCTTCATCAGAAACCACAGACATGAAGGAGTTGATCAAAGCAGCATTGAATGCAACAGCTGAAGAGTTTCTCAAGCTAATTGATAACTCAAAGCTTTACGATGAGTTAGCTACCAATGACATGACAAAACAAGCTACGGAGATTTGCAAAGAAGTCCTTGGTTATGCAGTTGATGATGTTCATCAATCCATCCACACATTGGACAGGTTTGATCTGACTAAAATGAATGAGTATGCTTATGATATCAAGGTTTGGCTCGCAGGTACTCTTTCTCATCAACAAACATGTTTAGATGGCTTTGAAAACACAACAACAGAAGCTGGACAAACCATGACTAAGGTTCTTAATGCCTCATTGGAGCTAAGTCACAATGCTTTGGATATCATTAACGGAGTTTCCGGTTTCATGAAAAGTCTTAACTTGAGCTCTTTGTCAAGTGCGGTTAATAGGAAGCTTTTGTCTGAAGATGGTTTCCCAACATGGATTGGTCAGAATCAAAGGAAACTTCTCGTGGCTCCTGAGAGTATTAAGCCTAATGTTATTGTTGCTCAAGATGGTACTGGACAGTTCAAGACTTTGACTGAGGCTCTTCAACTTGTTCCTGACAAAAACAAAACTCCTTTTGTTATTCATGTTAAAGCTGGTGTTTATGAGGAGTATGTTGCTTTGGATAAACATAAGAGCCATGTTATTATCATTGGTGATGGTCCTACCAAGACCAAATTCACTGGCAACAAAAACTATGTTGATGGTGTTCAGACCTACTTCACTGCAACATTCAGTGTTAATGCTGCTCATTTTATGGCTATCAACGTCGGTTTCGAGAACTCAGCAGGAGCAGAGAAGCATCAAGCAGTTGCCCTCCGTGTCACCGCGGATCAAGCAGTGTTCTACAACTGTCAAATGGACGGTTTCCAAGATACACTCTACACACAATCCAAAAGACAATTCTACCGCGACTGCACGATCTCTGGAACCATCGACTTCATCTTCGGTGATGCTGTCGGAGTTTTCCAAAACTGCAAACTCATTGTGAGGAAGCCAATGGAAGATCAACAATGCATGGTTACAGCAGGAGGAAGAACCAAAATCGACAGTCCATCAGGCCTTATTTTCCAAAGCTGTCACTTCACTGGCGAACCCGAAGTTCTTACCTTGGACCCCAAGATAGCATATTTGGGAAGACCATGGAGAAATTTCTCTAAGGTTGTTATCATGGATTCTAACATTGATGGTATCTTTGTACCAGAGGGTTATATGCCATGGATGGGAAGTCTTTACAAGGAAACTTGCACTTATTATGAATACAACAACAAGGGTCTTGGTGCTAACACTGAGCAAAGAGTGAAATGGCCAGGTGTTAAAGCCATAACTGCACCTGAAGCTGCTGATTTTTATCCAGGAAGGTTTTTTGAACTTGCAAACTCAACTCTGCGTGATGCTTGGATTACTTACTCTGGAATTCCTTATTCAGTTGGACCACTTGCCACTCCCACTGCATAA 1746 0.4192 MAAGAIENKNHDQKKKFAVLGVSSILLIAMVAAVAVGVSNGGDAAELLGGDDNRISKSQKNVKVLCDAAEYKKTCENSLAKASSETTDMKELIKAALNATAEEFLKLIDNSKLYDELATNDMTKQATEICKEVLGYAVDDVHQSIHTLDRFDLTKMNEYAYDIKVWLAGTLSHQQTCLDGFENTTTEAGQTMTKVLNASLELSHNALDIINGVSGFMKSLNLSSLSSAVNRKLLSEDGFPTWIGQNQRKLLVAPESIKPNVIVAQDGTGQFKTLTEALQLVPDKNKTPFVIHVKAGVYEEYVALDKHKSHVIIIGDGPTKTKFTGNKNYVDGVQTYFTATFSVNAAHFMAINVGFENSAGAEKHQAVALRVTADQAVFYNCQMDGFQDTLYTQSKRQFYRDCTISGTIDFIFGDAVGVFQNCKLIVRKPMEDQQCMVTAGGRTKIDSPSGLIFQSCHFTGEPEVLTLDPKIAYLGRPWRNFSKVVIMDSNIDGIFVPEGYMPWMGSLYKETCTYYEYNNKGLGANTEQRVKWPGVKAITAPEAADFYPGRFFELANSTLRDAWITYSGIPYSVGPLATPTA 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03979 581 FunFam Pectinesterase 4 257 575 - -
Vifa4g03979 581 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Vifa4g03979 581 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 212 IPR035513 -
Vifa4g03979 581 Gene3D - 257 576 IPR012334 -
Vifa4g03979 581 PANTHER PECTINESTERASE 26 565 - -
Vifa4g03979 581 SUPERFAMILY Pectin lyase-like 257 573 IPR011050 -
Vifa4g03979 581 NCBIfam pectinesterase inhibitor domain 57 212 IPR006501 GO:0004857
Vifa4g03979 581 FunFam Pectinesterase 58 214 - -
Vifa4g03979 581 CDD PMEI-like_3 65 215 - -
Vifa4g03979 581 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 213 IPR035513 -
Vifa4g03979 581 Pfam Pectinesterase 260 551 IPR000070 GO:0030599|GO:0042545
Vifa4g03979 581 Pfam Plant invertase/pectin methylesterase inhibitor 62 209 IPR006501 GO:0004857
Vifa4g03979 581 SMART PMEI_2 57 209 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03979 Vifa-Chr4 1273623226 1273625063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03979 13 577 Carbohydrate Esterase AT3G05610 44.815 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03979 K01051 - gmx:100800194 813.527