Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03978 ATGGATTCGGGTATGGGATCCGAAAACTACTACGCACACGGAGGGAAGATAATGCTATCCACCGTCATCATTCTCTTCATCATCACCGTCACACTCCTCTCTATTCACCTTCTTATCCGATGGCACCTTCTCCGTAATCGCAACCGTCAACAACACCTTCGCCGTGCACGCCACATTCGACGTCAGTCGTTTGTTTTTTACTTTGAGCACGATGTTCCTGGCTCGCTGAGGCTTGATGTCTCTCGCGGCCTCGATCCCTATGTCATATCGTCTCTCCCTGTGTTCAAATATTCTTCTGAGTCACAGCCGGATCAGGTGGATTGTGCTGTTTGTTTGTCCGAGTTTGAGGAAGGAGAAATGGGCCGTGTTTTGCCGAAGTGTAATCATAGTTTTCATGTTGATTGTATTGATATGTGGTTTCATTGTCATTCTACGTGTCCGCTTTGTAGAAAATCGGTGGAGCTTCTTCCTGTTCAAGTAACTGTGACTCGGCCTGAAGTGACGATTGATGTGTGTGAACCGGAGCTGATTTTGGGTTCGAGTTTTCGGGAAGAAACTAACGGGATTGAACCGGAGTTTACTTCTTCTTCGTGTTCTAATGAGAAGCAATCTTCGTTAGTTGGCGTCACAGTCGATGTTCCGGGAACGAGCGAGTGTGCGTGTGACTCTTCGTCGTCTTTCCCGTCGCCGATGAGTCGGGTGTTGTCGTTCACGAGAATTCTTAGCAGAGAGAGGAAATCGAGCGTTTCGGCTACGTCAGACTGTGTAGTGGAGTTAGATGCAGAACGAGGTGGAAGGGAGGAGACTCATTGA 813 0.4822 MDSGMGSENYYAHGGKIMLSTVIILFIITVTLLSIHLLIRWHLLRNRNRQQHLRRARHIRRQSFVFYFEHDVPGSLRLDVSRGLDPYVISSLPVFKYSSESQPDQVDCAVCLSEFEEGEMGRVLPKCNHSFHVDCIDMWFHCHSTCPLCRKSVELLPVQVTVTRPEVTIDVCEPELILGSSFREETNGIEPEFTSSSCSNEKQSSLVGVTVDVPGTSECACDSSSSFPSPMSRVLSFTRILSRERKSSVSATSDCVVELDAERGGREETH 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03978 270 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Vifa4g03978 270 SMART ring_2 108 149 IPR001841 -
Vifa4g03978 270 Pfam RING-like zinc finger 107 136 IPR001841 -
Vifa4g03978 270 CDD RING-H2_EL5-like 107 150 - -
Vifa4g03978 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 155 IPR013083 -
Vifa4g03978 270 SUPERFAMILY RING/U-box 87 156 - -
Vifa4g03978 270 FunFam RING-H2 finger protein ATL3 76 155 - -
Vifa4g03978 270 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 16 154 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03978 Vifa-Chr4 1272949983 1272950795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03978 2 267 Rapid Response to Elicitors AT3G16720 41.980 1.44e-58 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03978 - - pcin:129320593 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03978 4 1272949983 1272950795 Vifa4g03978 4 1272949983 1272950795 ECH
Vifa4g03978 4 1272949983 1272950795 Vifa1g09372 1 1480741175 1480742026 PCT