Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03952 ATGCTTAGTCCTGAAGGAGAAATTAAAATAAGTTTTGGTTATAAATGCAATAATAATAGAGGTATTTCTAACGAGATCGCTAATGGGTACAAAAATCTTCCCGAAATCCGTAGAACAAGTAGTTTCTCTTGTTTATCTGGTGCAGCCTTGAGTGCAAATGCTACACTAGCCAACACAAACATCTGCAATGGTAAGATAGGTGGAGAGATCCTTCCAAGTTGGGACTCTCCTAATTCGTTTCGTAGAGTACCTTCTTCGCCAAGTCTTTCACGGTTCGGTAGACTATCGTCTTCCCTCCCAAGTAGTCTCTCTTACCTTAGTTGCAGTCCATCAACAGCTAGTGACAGCCTTGAATACGAGTTGAAATCTGCGAGTGATCGATCCAGTAGTGACGGATTTCTTATTGCCACAGAAGTTCAAGTAGCAGGAGGAGCTGCGGGCGAAGATAGAGTTCAAGCTGTTTGTTCTGAAGAAAATGGCTGGCTCTTTTGTGCAATTTATGATGGTTTTAATGGAAGAGATGCTGCAGATTTTTTAGCAGGTACACTTTACGACACCATCATATCTTATCTAGATAAGTTAATTTGGGAATTGGAGCCAGGTTCCATCACAGCTTCCAATCACGCGGATTTGGGAGAATTCTTTCGATATAAGTTGGAAGATAGTGTTCATTGTCACGAGGATCGTTCTCTGGCGCGCGGAGTACTTGATAGCCTCGAACATGCTCTCAGTCAGGCTGAGAACGATTTCTTATACATGGTTGAGCAGGAAATGGTGGAACGTCCGGATTTAGTTTCGATTGGATCTTGTGTTCTGCTTTTGCTTCTTCATGGTAATGATTTGTATACTTTGAATCTCGGTGACAGTAGAGCAGTATTGGCGACATGCAGTAACAGTGACAGAACGAATAAGAGTGAGAAACTCAAGGCTATACAGCTTACAGATAATCACACTGTCGATAATGAAGCTGAAAGAGCCAGACTCATGGCCGAACATCCCGATGATCCTAAGGTCGTCATAGCAGGAAAAGTGAAAGGTAAATTGCAGGTTACTCGCGCATTCGGAGTTGGCTACTTAAAAAAGAAAAATCTGAATGATGCTTTGATGGGAATCCTAAGAGTTCACGACCTGACGAGTCCACCATATGTTTCCACTCAACCATCACTAAATGTCCATAAAATCTCGAATTCGGATCAATTTGTTATAGTAGGAAGTGATGGATTGTTCGACTTCTTCAGCAATGAAGAGGCGGTGAAGCTTGTAGAGTCTTACATCTTAAGCAATCCTTTTGGTGATCCTGCAAAGTTTCTCATAGAGAAACTTGTAGCTAGAGCAGCTAATTCCGCAGGTTTCAGCATGGAAGAGTTGATGAATGTTCCGGCCGGGAGGAGAAGAAAGTACCATGATGATGTTACTGTAATAGTGGTCATGCTAGGGATGAACCAACGGACTTCAAAAGCTTCAACTTGTATTTAA 1476 0.4207 MLSPEGEIKISFGYKCNNNRGISNEIANGYKNLPEIRRTSSFSCLSGAALSANATLANTNICNGKIGGEILPSWDSPNSFRRVPSSPSLSRFGRLSSSLPSSLSYLSCSPSTASDSLEYELKSASDRSSSDGFLIATEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYDTIISYLDKLIWELEPGSITASNHADLGEFFRYKLEDSVHCHEDRSLARGVLDSLEHALSQAENDFLYMVEQEMVERPDLVSIGSCVLLLLLHGNDLYTLNLGDSRAVLATCSNSDRTNKSEKLKAIQLTDNHTVDNEAERARLMAEHPDDPKVVIAGKVKGKLQVTRAFGVGYLKKKNLNDALMGILRVHDLTSPPYVSTQPSLNVHKISNSDQFVIVGSDGLFDFFSNEEAVKLVESYILSNPFGDPAKFLIEKLVARAANSAGFSMEELMNVPAGRRRKYHDDVTVIVVMLGMNQRTSKASTCI 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03952 491 CDD PP2Cc 146 476 IPR001932 -
Vifa4g03952 491 Gene3D - 105 487 IPR036457 -
Vifa4g03952 491 ProSiteProfiles PPM-type phosphatase domain profile. 133 478 IPR001932 -
Vifa4g03952 491 SUPERFAMILY PP2C-like 146 479 IPR036457 -
Vifa4g03952 491 Pfam Protein phosphatase 2C 213 445 IPR001932 -
Vifa4g03952 491 SMART PP2C_4 120 476 IPR001932 -
Vifa4g03952 491 PANTHER PROTEIN PHOSPHATASE 2C 140 476 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03952 Vifa-Chr4 1265238374 1265240102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03952 4 491 PP2C-type Phosphatase Gene Family AT3G16560 63.546 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03952 - - gmx:100808304 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03952 4 1265238374 1265240102 Vifa1g09297 1 1472199566 1472204238 PCT