Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03942 ATGTTTCAACATCACCGTCTCAGGAGTCTTCTCTACTCCCAAACCCCAAAATATCACCTTCTTCGAACAATCCACCTCTCTTTCAATCCCTTCTCCACCGCCACTCCAGATTCATCTCAACAATCCTTCACACTCTCCTACCTCACCAACACTCTCGGTTTATCTCCACAAGATGCTCTCAAAGCATCCAAACGTATCAATTTCACCACCCCCCTAAAACCCAATTCCGTTATCACCTTCTTCAAAACCCACGGTTTCTCCAACCCCCAAATCCAATCCATCATCCTCAAATCCCCAAAACTCTTATCATCCAACCCCACCAATACCATTCTCCCTAAGTTTCAATTTTTAGCCTCCAAAGGCGCTTCCCCTTCCGACATAGCCGCCACCGTCAGCAGTGACTTGAGAAAGGCTGTGGAGGAGATTAAGGAATTAGGGTTTCATCCTTCCAAGTACAACTTTTGTGTTGCATTGTTTGCCAAAAGGGCTATCTCTAAATCACAATGGAATGCTAAAGTTGATGCCTTGAAGAGTTGGGGTTGTTCTGAAGATGTGATTCTGAGTGCCTTTAAAAAGCAGCCTAACTTTATGCTACGGTCGCCGGATAAACTCAATGCGGTGATGCGTTTTTGGGTCCAAGAGCTTGGTTGGGATCCTTCACTGCCACTGGCAGCACCGGATCTTTTCGGATTTAGTCTAGAGAAGAGGCTTATTCCGAGGGCTTCTGTTGTCAGGTATCTTCTTTCCAATGGTTTGATGAAGAAGAGTGCTAGCTTAGTATCGCCGTTCTATCCGACCGACGAGTTGTTCCTGCAAAGGTATGTGAAACGGTTTAAGGATGAAGCATCTATGCTATTAAAGCTATATCAAGGGAGGATGCTAGCATCTTCTGGTGCTTGGATAAGTTGTCAAAACACATTTTGTTGTAACTGA 933 0.4491 MFQHHRLRSLLYSQTPKYHLLRTIHLSFNPFSTATPDSSQQSFTLSYLTNTLGLSPQDALKASKRINFTTPLKPNSVITFFKTHGFSNPQIQSIILKSPKLLSSNPTNTILPKFQFLASKGASPSDIAATVSSDLRKAVEEIKELGFHPSKYNFCVALFAKRAISKSQWNAKVDALKSWGCSEDVILSAFKKQPNFMLRSPDKLNAVMRFWVQELGWDPSLPLAAPDLFGFSLEKRLIPRASVVRYLLSNGLMKKSASLVSPFYPTDELFLQRYVKRFKDEASMLLKLYQGRMLASSGAWISCQNTFCCN 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03942 310 PANTHER CGI-12 PROTEIN-RELATED 39 133 IPR003690 GO:0003690|GO:0006355
Vifa4g03942 310 SMART mt_12 219 253 IPR003690 GO:0003690|GO:0006355
Vifa4g03942 310 SMART mt_12 187 218 IPR003690 GO:0003690|GO:0006355
Vifa4g03942 310 SMART mt_12 92 123 IPR003690 GO:0003690|GO:0006355
Vifa4g03942 310 Pfam mTERF 79 132 IPR003690 GO:0003690|GO:0006355
Vifa4g03942 310 Pfam mTERF 164 270 IPR003690 GO:0003690|GO:0006355
Vifa4g03942 310 FunFam Mitochondrial transcription termination factor-like 72 282 - -
Vifa4g03942 310 Gene3D Transcription termination factor 3, mitochondrial 40 287 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03942 Vifa-Chr4 1260873012 1260874172 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa4g03942 mTERF 2.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03942 K15032 - gmx:100792944 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03942 4 1260873012 1260874172 Vifa4g03942 4 1260873012 1260874172 ECH
Vifa4g03942 4 1260873012 1260874172 Vifa1g09278 1 1468200542 1468201717 PCT