Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03940 ATGTTCCATTCTCACCGTCTCAAAGCTGTTGTCTACCTCAACCATCTTTCTTCAACTCCAAAATCTCACCACCTTCTTCACTCTCTCAATCCCTTCTCCACCACTTCAGATTCCTTCACCCTATCCTACTTCACCAACAACTGTGGCTTATCTCCACAAGACGCTCTCAAAGCCTCAAAACGACTCCGTCTCACTTTCACCACCCCCGAAAAACCCAACTCCGTTATCGCCTTCTTCAAAACCCATGGTTTCTCCATTCCCCAAATCCAATCCATCATTCTCAAGAACCCCCAACTCATCCTCTCCAACCCCACCAAAACCATTCTCCCTAAGTTTCAATTTTTAGCCTCCAAAGGCGCTTCTCCCTCCGACATAGTCGCCGCCGTCACCAGAAGCTCTCGTTTCCTCCGTGTAAGCCTCGAGAAACATATTATCCCCGCTTTTCAGTTGGTACGACGTTTCTGTCCCTCCGATCAAAAAGCCATTACTTCAATTATCATTTGTCCTGCTTCAATTAGTGATGTTCGCATGAAACCCAATGTCAATTTTTTGCTTGATTATGGGGTTACTCCATCTAGTATTTACCATTTGCTTAGTACTAGACCTTCTGTGATTTGTTCTACTGATTTGACCGAGGTTGTGGAGGAGATTAAGGGATTAGGGTTTCACCCTTCTAAATACAATTTTTGTGTCGCATTATTAGCCAAAAGGGGTATATCCAAATCCCAGTGGGATGCTAAAGTTGATGTCTTGAACAAATGGGGTTGGTCCCAAGATGAAATTTTGCATGCATTTAAAAAGAACCCTAAGATTATGCTACGGTCTGCGGATAAACTCAACGCCGTGATGACTTTTTGGATCAAACAGCTTGGTTGGGATCCTTCCGTGCTCTTGGCAGCGCCGGATCTATTTGGATTTAGTCTCGAGAAAAGGCTGATTCCAAGGGCTTCAGTTGTCCGGTATCTGTTATCTAAAGTAGCGTCGAGGCTATTAAGGCTATATCAGGGGAAGGATGCTAGCTTATAG 1026 0.4444 MFHSHRLKAVVYLNHLSSTPKSHHLLHSLNPFSTTSDSFTLSYFTNNCGLSPQDALKASKRLRLTFTTPEKPNSVIAFFKTHGFSIPQIQSIILKNPQLILSNPTKTILPKFQFLASKGASPSDIVAAVTRSSRFLRVSLEKHIIPAFQLVRRFCPSDQKAITSIIICPASISDVRMKPNVNFLLDYGVTPSSIYHLLSTRPSVICSTDLTEVVEEIKGLGFHPSKYNFCVALLAKRGISKSQWDAKVDVLNKWGWSQDEILHAFKKNPKIMLRSADKLNAVMTFWIKQLGWDPSVLLAAPDLFGFSLEKRLIPRASVVRYLLSKVASRLLRLYQGKDASL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03940 341 SMART mt_12 126 157 IPR003690 GO:0003690|GO:0006355
Vifa4g03940 341 SMART mt_12 294 328 IPR003690 GO:0003690|GO:0006355
Vifa4g03940 341 SMART mt_12 262 293 IPR003690 GO:0003690|GO:0006355
Vifa4g03940 341 SMART mt_12 90 121 IPR003690 GO:0003690|GO:0006355
Vifa4g03940 341 Pfam mTERF 240 325 IPR003690 GO:0003690|GO:0006355
Vifa4g03940 341 Pfam mTERF 77 223 IPR003690 GO:0003690|GO:0006355
Vifa4g03940 341 PANTHER CGI-12 PROTEIN-RELATED 36 324 IPR003690 GO:0003690|GO:0006355
Vifa4g03940 341 Gene3D Transcription termination factor 3, mitochondrial 46 170 IPR038538 -
Vifa4g03940 341 Gene3D Transcription termination factor 3, mitochondrial 171 335 IPR038538 -
Vifa4g03940 341 FunFam Mitochondrial transcription termination factor-like 140 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03940 Vifa-Chr4 1260342221 1260343339 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa4g03940 mTERF 1.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03940 K15032 - gmx:102667698 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03940 4 1260342221 1260343339 Vifa4g03940 4 1260342221 1260343339 ECH