Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03939 ATGCTGAAAATCTTCACCACCACTGGTCTTGCGTTTCTCGCGAAGAGAAGTGCCACTAAGGCGCAGTGGGATGAGAAAGTTGAAACCTTTAAGAAATGGGGCTGGTCTGATGAACAGATTCTTGAAACATTTAAGAAGCATCCTTTCTGTATGCTGGTATCGCCTCGGAAAATCAATGCAATCATGGATTTTTGGGTTCACCACTTAGGTTTGGATTCTTTGGACCTTGCCAGAGCTCCTGGAATTCTTCAATGCAGTCTCGAGAAGAGGATTATTCCTAGAGCTTCGGTTGTGCAGTTTCTTATCTCGAAAGGCTTGCGACGGAAGGATGCAGGCGTGTATACGCCGTTTGTTGTATCTGAGAAGTTGTTTGTGGAGAAGTTTGTGAAAGGCTTTGAGGAGCATTCTTCTGATCTCATAAAGCTTTATGAGGAAAAACTGAATCTTGCAGATGGTAGGAACGGCATTCAGCTGGTGTGA 480 0.4437 MLKIFTTTGLAFLAKRSATKAQWDEKVETFKKWGWSDEQILETFKKHPFCMLVSPRKINAIMDFWVHHLGLDSLDLARAPGILQCSLEKRIIPRASVVQFLISKGLRRKDAGVYTPFVVSEKLFVEKFVKGFEEHSSDLIKLYEEKLNLADGRNGIQLV 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03939 159 Gene3D Transcription termination factor 3, mitochondrial 9 137 IPR038538 -
Vifa4g03939 159 SMART mt_12 73 107 IPR003690 GO:0003690|GO:0006355
Vifa4g03939 159 SMART mt_12 41 72 IPR003690 GO:0003690|GO:0006355
Vifa4g03939 159 PANTHER CGI-12 PROTEIN-RELATED 11 131 IPR003690 GO:0003690|GO:0006355
Vifa4g03939 159 Pfam mTERF 21 111 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03939 Vifa-Chr4 1260310652 1260311824 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa4g03939 mTERF 6.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03939 K15032 - mtr:25488156 190.274