Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03937 ATGGTGGACAACAACATTGGAGGAAGTTCTTTTGATAACGAAAACGGTGGCGTTAAGGAACAAGATCGGTTGTTACCGATAGCAAATGTTGGGAGGATAATGAAGCAGATATTACCACAGAATGCAAAAATCTCAAAGGAATCAAAAGAAACAATGCAAGAGTGTGTTTCAGAGTTCATAAGCTTTGTGACAAGTGAAGCATCAGAGAAATGCAGGAAGGAAAGAAGAAAGACAGTGAATGGTGATGATATCTGTTGGGCTTTAGGCACACTTGGTTTTGATGATTATGCTGAACCAATGAGAAGGTATTTGCATAGATATAGAGAATTAGAAGTTGATAGAACACCAACTGCTAATAATATTGTTCAAGATAGAGGAAATTAG 384 0.3724 MVDNNIGGSSFDNENGGVKEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGTLGFDDYAEPMRRYLHRYRELEVDRTPTANNIVQDRGN 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03937 127 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Vifa4g03937 127 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Vifa4g03937 127 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Vifa4g03937 127 FunFam Nuclear transcription factor Y subunit B-3 13 127 - -
Vifa4g03937 127 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Vifa4g03937 127 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vifa4g03937 127 SUPERFAMILY Histone-fold 21 120 IPR009072 GO:0046982
Vifa4g03937 127 Gene3D Histone, subunit A 12 126 IPR009072 GO:0046982
Vifa4g03937 127 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 114 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03937 Vifa-Chr4 1259786066 1259786449 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03937 18 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 79.381 2.20e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vifa4g03937 CBFD_NFYB_HMF 3.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03937 K08065 - mtr:11422870 214.927