Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03928 ATGGGCCCTACCAGGAAATCTAGAAGTGTAAATAAGAGGTTCTCTAATATTCGTGAGGCTGCATCTAGTAAAGATAAAGATGCACCAAATACTGGCAAGAACAGGCAGAAGGCTAGTCCTGGTATTCAGAAGAAGAGAAAATTGGCCGACATGTTAGGGCCACAATGGAGTAAGGAGGAGCTCAAACGTTTCTATGAAGCTTACCGTGAACATGGGAAAGATTGGAAGAAGGTTGCTCTTGCAGTACGCAATAGAACCATGGAAATGGTAGAAGCCCTGTACACTATGACCAGGGCGTACTTATCTCTTCCAGAGGGCACTGCTTCTGTTGTTGGACTGATAGCAATGGTGACTGATCATTATAGTATTCTGGGAGGAAGTGACAGTGGAAAAGAAAGCAACGGAGATGCAGAAATGTGTAAAAAGTCTAAAAAACGTCCACGGGGAAAGCAAAATGACAGTAAAGTAGTAGCAGAACACTTTTCAGATCATTCTCAGCCACATTCTGTTGCATCAGATGATGGTTGCCTGTCATTGTTGAAGAAGAGGCATTCTGGAATTAGACCTCATGCTGTTCGAAAAAGGACTCCCCGTGTCCCTATTTCGTATTCTATTGGCAAAGATAATGGGGGAAAGTTTTTTTCATCTGCTAGGCAGGACTCCAAACAAATGGCTGATACAAATGATGTCACTCATAAAATTGCATTAGCACTGGCAGAGGCTTCACAACGAGGTGGTTCATCAAAAAATATTGGATCGTCAAACAAGAAAAACATGCCATCACCCAATCTGAAAATTGGGAAGAAGCATGTTAAACTAGAAATAGTTGGAGCCAAGTTTGGCAACTCTAACATGGATGAGAGTAGTTCTGAGTTGAGTTTAGGAAGCACAGAAGGTGATAATGGAGGCTATTCTAGAAAATTAATTTTTCGGAGCAGTAGAGAAAATACTGGAAGAGAAAGGAATCAGGAAAAGGGAATAAAACACTACAGAAAGAATTTAAAACCCGAGGAAAATATGAACAAGCATTTGAATGACCTGAAGGAGGCCTCCAGTGGGACTGATGGTGGTAAAAACCAGAGTTCCTTCAAGTCCAATTTTGACATAGATTTTCCAAATGCAAAAAGTGCAAGGTCTTCTTACAAGGGTCCCAGAAAGAGAAGTAAAAAACTACTTTTTGAGAAAGATGAAAGTTCGGCTTTCGATGCTCTGAAAACTTTGGCTGATCTATCTTTGATGATGCCGACAACAAACCCAGACACTGAATCATCTGCGCAATTCAATGAAGAAAAGCATAATATGGATGATGAGTCTAAAATGGAAACAGATAATGGAAACAGTTCCAGAAAATCCGGCAAGGTTTTTTCTGATAAAGGAGCTGCTGCTCCCAAAGCAGAGGGAGCATACCAGCTTAATGCTGGAAGCAGGAAAAGAAAACAAAAATCAGCTACGTTAAAAATTGATGAAACACATACTGGTTCTCATATAAGTGGTTCCCAGAAATTCAAGGTTACTGATGAGGTAAAGAAGTCCTTGGTTAAAGGCAAGCGATCATCTGTCAGTACAGCTCATTCCAGACAATTGAAAATGGTGACATCCCTAGGAAATATGTCTTCAAATATTATTGACAAAGCAGAAAGGGATGGCTCATCTTTTTCCCCTATAAAAGTTTTGTCTACTAACCAAGTTAGTCTAGTAAGCAGAGACCGACCTAGAAGAAAGATGGAAAAACCAAAACCAATGGTACAAAAAGATCATAGAGTGTCTGAAAAATCCATTGCTTCTTACTGGTGGAATAGTATTGAACGTCACAAGGGAAAGCTTACTAATTGTCTATCTTCATATCAAATGCGGCGATGGTGCACCTCTGAATGGTTTTATAGTGCTATTGATTACCCATGGTTTTCAAAGAGAGAGTTTGTAGAGTACTTAGACCATGTTGGACTGGGTCATGTTCCCAGATTGACTCGGATTGAGTGGGGAGTCATTAGAAGTTCTCTTGGTAGACCACGAAGATTTTCAGAGCAATTTTTGATAGAAGAAAAACATAAACTTAATCAGTACCGGGAATCTGTCAGATCACATTATGCTGAAGTTCTTGCTGGTACCAAGGAAGGCCTACCTGCTGATTTGGCCCAGCCTTTAATTGTTGGGCAGCGAGTTATTGCTATTCACCCAAAGACAAGGGAGATTCATGATGGCAGTATATTGACTGTTGACCATTGTAGATACCGGGTTCAGTTTGACCAGCATGAACTTGGAGTTGAGTTTGTCATGGATATTGACTGCATGCCTTTGTATACATCTGAAAATATGCCCGTGTCTCTGATAAGACACCATATCTCTCCTGCTAGAATAAATGAGAACCTTAGTGAGCTTACGCATAATGGAAAAATAAGTCACAGAAAGATCTCCGAGCATACAATATTGTCCCAAAGTGAGAACTCAGATGCCATAAAAGGTCGCTGTGTACTACCCGCATTACATGGGTTTTCTTCTAGCTGCAAATCACATGCAAAAGTTGCGGGCAGTGAGATTTGTAATGGCCAATCAGCATCAAGTTCTCAATCTTCCTTTCTTGAACGAGTCCATTCAAAAGAAGCTGATATATTAGCTATTTCAGAATTGACTCGTGCTCTAGAAAAGAAGGAACTTGTGTTGTCTGAACTGAAGCACATGAATGACGAGGTATCTGAAAGCCAGAAATGCGGAGACAACTCGGTGAAAGATTCAGAACCTTTTAAAAGGAATTATGCTTCGGTGCTAAAGCAATTAACTGAAGCAAATGAACAGGTTTCTTCTGGCTTGTTTTGCTTGAGGCAACGCAATGCATATCAAGCAACTTCCTCAGTTTTGTCATTGAAGCCCATGGCAAATCTCGATGATCCTGGCTGTCAGGCTAGCTCTTCCAATTGTTCAGCTTGCAACAACCAGGAATCTATATCTCAAAGTCATATAGCTGAAATTGTTGAAAGTTCTAGAAGAAAAGCCCGGACCATGGTTGTTCAAGCTACCCAGGCAATGTCAGTTTATACGAAGACAGAAAGTAAGGTTGAAAGAATTGAGGATGCAATAAATTTTATTAATTACCGGCTTTTGGTTGATGACTCTACCGCTTCGGTCACAAGTTCTCTGCCCATGGATTCTATGACTTTGGCTTCTCGGGATCAATTGAATGCTAGCAGCACATTAAACATTTTAGCAAGGTGTCATGTACAAGATGATGAACTTAACATTTCATCTGATCAAAATGAAATGAAAATTCCCTCAGAACTCATATCTCATTGTCTAGCTACACTGCTCATGATTCAGAAGTGTACGGAAAGACAATTTCCCCCAGCTGATGTTGCACAGGTATTAGATTCTGCAGTCTCCAGTTTGCAGCCATTTTGTTCAAAGAATCTTCCAGTATATGGTGAGATACAGAAATGTATGGGCATCATAAGAAATCAGATATTGGCACTTGTACCTACCTAG 3477 0.4038 MGPTRKSRSVNKRFSNIREAASSKDKDAPNTGKNRQKASPGIQKKRKLADMLGPQWSKEELKRFYEAYREHGKDWKKVALAVRNRTMEMVEALYTMTRAYLSLPEGTASVVGLIAMVTDHYSILGGSDSGKESNGDAEMCKKSKKRPRGKQNDSKVVAEHFSDHSQPHSVASDDGCLSLLKKRHSGIRPHAVRKRTPRVPISYSIGKDNGGKFFSSARQDSKQMADTNDVTHKIALALAEASQRGGSSKNIGSSNKKNMPSPNLKIGKKHVKLEIVGAKFGNSNMDESSSELSLGSTEGDNGGYSRKLIFRSSRENTGRERNQEKGIKHYRKNLKPEENMNKHLNDLKEASSGTDGGKNQSSFKSNFDIDFPNAKSARSSYKGPRKRSKKLLFEKDESSAFDALKTLADLSLMMPTTNPDTESSAQFNEEKHNMDDESKMETDNGNSSRKSGKVFSDKGAAAPKAEGAYQLNAGSRKRKQKSATLKIDETHTGSHISGSQKFKVTDEVKKSLVKGKRSSVSTAHSRQLKMVTSLGNMSSNIIDKAERDGSSFSPIKVLSTNQVSLVSRDRPRRKMEKPKPMVQKDHRVSEKSIASYWWNSIERHKGKLTNCLSSYQMRRWCTSEWFYSAIDYPWFSKREFVEYLDHVGLGHVPRLTRIEWGVIRSSLGRPRRFSEQFLIEEKHKLNQYRESVRSHYAEVLAGTKEGLPADLAQPLIVGQRVIAIHPKTREIHDGSILTVDHCRYRVQFDQHELGVEFVMDIDCMPLYTSENMPVSLIRHHISPARINENLSELTHNGKISHRKISEHTILSQSENSDAIKGRCVLPALHGFSSSCKSHAKVAGSEICNGQSASSSQSSFLERVHSKEADILAISELTRALEKKELVLSELKHMNDEVSESQKCGDNSVKDSEPFKRNYASVLKQLTEANEQVSSGLFCLRQRNAYQATSSVLSLKPMANLDDPGCQASSSNCSACNNQESISQSHIAEIVESSRRKARTMVVQATQAMSVYTKTESKVERIEDAINFINYRLLVDDSTASVTSSLPMDSMTLASRDQLNASSTLNILARCHVQDDELNISSDQNEMKIPSELISHCLATLLMIQKCTERQFPPADVAQVLDSAVSSLQPFCSKNLPVYGEIQKCMGIIRNQILALVPT 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03928 1158 Pfam Myb-like DNA-binding domain 55 90 IPR001005 -
Vifa4g03928 1158 MobiDBLite consensus disorder prediction 1 47 - -
Vifa4g03928 1158 Coils Coil 873 893 - -
Vifa4g03928 1158 MobiDBLite consensus disorder prediction 414 484 - -
Vifa4g03928 1158 MobiDBLite consensus disorder prediction 1 17 - -
Vifa4g03928 1158 MobiDBLite consensus disorder prediction 567 585 - -
Vifa4g03928 1158 Gene3D - 56 108 - -
Vifa4g03928 1158 MobiDBLite consensus disorder prediction 18 32 - -
Vifa4g03928 1158 MobiDBLite consensus disorder prediction 352 373 - -
Vifa4g03928 1158 MobiDBLite consensus disorder prediction 346 388 - -
Vifa4g03928 1158 MobiDBLite consensus disorder prediction 243 261 - -
Vifa4g03928 1158 SMART DIRP_2 626 727 IPR033471 -
Vifa4g03928 1158 MobiDBLite consensus disorder prediction 425 446 - -
Vifa4g03928 1158 MobiDBLite consensus disorder prediction 566 585 - -
Vifa4g03928 1158 CDD SANT 56 90 IPR001005 -
Vifa4g03928 1158 MobiDBLite consensus disorder prediction 126 173 - -
Vifa4g03928 1158 PANTHER LIN-9 1 1158 IPR010561 GO:0006351|GO:0017053
Vifa4g03928 1158 MobiDBLite consensus disorder prediction 240 264 - -
Vifa4g03928 1158 MobiDBLite consensus disorder prediction 282 300 - -
Vifa4g03928 1158 MobiDBLite consensus disorder prediction 282 305 - -
Vifa4g03928 1158 ProSiteProfiles SANT domain profile. 51 88 IPR017884 -
Vifa4g03928 1158 SMART sant 52 100 IPR001005 -
Vifa4g03928 1158 Pfam DIRP 625 726 IPR033471 -
Vifa4g03928 1158 SUPERFAMILY Homeodomain-like 52 99 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03928 Vifa-Chr4 1255323362 1255345829 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa4g03928 DIRP 2.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03928 - - gmx:100811517 1687.93