Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03927 ATGGAGGAAGAAACTCTCGATAACGACCGGCATCAAATCCGCAACATATGCATACTAGCCCACGTAGACCACGGCAAGACAACGCTGGCGGACCAGCTTATCGCGACGGCGGGCAGTGGCATGGTCCATCCCAAGGTAGCAGGTAAAGTCCGGTTCATGGATTTCCTTGACGAAGAACAACGTCGAGCCATAACAATGAAGAGTTCCTCTATTTCGCTTCACTACAATCACCACACCGTTAATCTGATCGATTCCCCTGGGCATATTGATTTCTGCGGCGAAGTATCGACTGCGGCGCGTCTTTCCGATGGTGCACTTCTTTTGGTTGATGCGGTTGAAGGTGTGCATATTCAGACTCATGCTGTTCTTCGTCAATGTTGGATCGAACGGCTTTCGCCTTGTCTTGTGCTTAATAAGATGGATAGGTTAATTACTGAGTTGAAGCTTACTCCTTTTGAAGCGTATACGCGACTTTTGAGAATTGTTCATGAGGTTAATGGGATTGTGAGTGCTTATAACTCGCAGAAGTATTTGTCTGATGTTGATTCTCTTCTTGCCGGCGGGACTGCTGCTGGAGGTGAGGTTATGGAGGATTATGATGATGTTGAAGATGTTTTTCAGCCTCAGAAAGGGAATGTTGTGTTTGCTTGTGCTTTGGATGGTTGGGGTTTTGGGATTCATGAGTTTGCTGAGATATATGCTTCAAAGCTTGGTGCTAGTGTGAGTGCGTTGCAAAAGGCTTTGTGGGGTCCGAGATATTTTAACGCCAAGACGAAGATGATTGTTGGGAAGAAAGGAATTGGTGGTGGTGGTAAGGCGAAGCCTATGTTTGTTCAGTTTGTGTTGGAGCCTCTGTGGCAGGTTTATCAAGGAGCACTTGGAGGGGATAAAGGGTTGGTTGAGAAGGTTATTAAGTCTTTCAATTTGCAGATTCCGGCCAGAGAATTGCAGAATAGAGATTCTAAAGTTGTGCTTCAAGCTGTTATGAGTCGTTGGCTTCCTCTTTCCGATGCCATTTTGTCGATGGTGGTGAAGTGTATGCCGGATCCTGTGGCAGCACAGGGTTCTCGGATATCGCGACTCATTCCGCAGCACGAGGTTGGTTCTGAAAATGGAGTTGATAGGAGGGTTTTGGAGGAGGCTGAGCTTGTGAGGAAGTCGGTGGAGGGGTGTGATTGGAGGGGTGAAGTTCCTTGTGTTGCCTTTGTGGCGAAAATGTTTGCTCTTCCTGTTAAAATGCTTCCTCCTCCTCAAGTGGGGGAGTTTGTGGGGAGTTTTGGTGAGGAAGGTGAGGGTGAATCTGATGAGTGTTTTTTAGCATTTGCTAGGATATTTAGTGGTGTTTTGTCTGTTGGGCAGAGGGTTTTTGTGATTTCAGCATTGTATGATCCTTTGAAAGGGGAGTCTATGCAAAAGCATATACAAGAGGCTGAATTGAAATCCATGTATTTGATGATGGGCCAAGGGTTGAAAGTAGTGAAATCTGCAAAAGCAGGAGATGTTGTTGCGATCCGAGGACTTGGCCAGTATATTTTGAAAAGTGCTACACTTTCTTCTACTAGGAACTGTTGGCCTTTTTCGAGTATGGCGTTTCAAGTTGCCCCGATTTTGAGGGTTGCTATTGAGCCATCTGACCCTGCAGATATGGGTGCACTGCTCAAAGGCTTGAGGCTTTTGAATCGAGCAGATCCGTTTGTCGAGGTCACGGTTTCTGCTAGAGGAGAGCATGTTCTTGCTGCGGCTGGTGAAGTTCATCTGGAGAGGTGCATAAAGGATTTGAAGGATAGGTTTGCGAAAGTAAGCTTGGAAGTCTCTCCACCCCTTGTGTCCTACAAAGAGACTATTGAAGGAGAGGTGTCCAACATGCTGGAAAATTTGAAAGTTCTTAGCAAGAACTTAGATTATGTTGAGAAAACGACGCCCAATGGAAGATGTGTTGTACGTGTGCAGGTGATGAAACTTCTACCTTCTCTCACAAAGGTGCTTGATGAAAGCGCTGAATTACTTGGAGATATCCTTGGAATAAAGTCAGGGCAGACAGTTAAAAGTTTGGAAACTCAGAGAACAAATATTCTCGAAAATGAGAATCCAGCGGAAGTGATTAAAAAGCGTATAATGGAAGCAATTGAGAGTGACATTTTGTGTAGGATCGAGAATGATGAAGACCAGGCCGAGAAATGCAGATTGAAGTGGTTAAAGCTTTTGAGGAGGATTTGGGCACTTGGACCTAGTTACACTGGCACTAACGTTCTCTTTACTCCTGATATTAAAGCAGAAAGTACTGATAGCTATGTTCTAATACGCGGTTCTTCTCAACTATCTGAAAGGTTGGGTTTTGTGGCTGATTCTGGTAACAGTAACTCGGTTTCAGAGACATCTTCAAATGAGAGCCAAGTGTTGTATATGGATGCCGAGCGTCTTGAGAGTAATGTTATAACAGGGTTCCAACTAGCAACTTCAGCCGGGCCTTTATGCGATGAACCTATGTGGGGTTTGGCATTTGTCATCGAGGCACGGATATCTTCATCTACAGGACATCACGATGAATCCGAAACACACCAACAATCCGACCAGTATGGCATCTTTGCTGGGCAGGTTATTGCAACCGTCAAAGATGCTTGTAGGACAGCTGTGCTAAAGAATAAGCCAAGGCTTGTGGAAGCAATGTACTTTTGTGAATTGAATACCCCTACTGAATATTTAGGCCCCATGTATGGTGTACTTTCCCGAAGACGGGCTCGAATTTTGAAAGAAGAGATGCAGGAAGGTTCCCCTTTCTTCACCGTGCATGCATATGTTCCTGTTTCTGAAAGCTTTGGCTTTACTGATGAGCTCAGAAGCAAAACTTCTGGCGCGGCAAGTGCACTTCTTGTCCTTAGCCATTGGGAAGCACTACTCGAGGATCCTTTCTTTGTACCTAAAACAGAAGAGGAAATCGAAGAGTTTGGAGATGGTTCCAGCGTTCTTCCAAATACAGCAAGAAAGTTGATTGACACGGTCAGACGACGGAAGGGCCTTCCTGTGGAGGAAAAGGTAGTACAACATGGAACAAAGCAGAGGACACTCGCCCGGAAAGTTTGA 3081 0.4537 MEEETLDNDRHQIRNICILAHVDHGKTTLADQLIATAGSGMVHPKVAGKVRFMDFLDEEQRRAITMKSSSISLHYNHHTVNLIDSPGHIDFCGEVSTAARLSDGALLLVDAVEGVHIQTHAVLRQCWIERLSPCLVLNKMDRLITELKLTPFEAYTRLLRIVHEVNGIVSAYNSQKYLSDVDSLLAGGTAAGGEVMEDYDDVEDVFQPQKGNVVFACALDGWGFGIHEFAEIYASKLGASVSALQKALWGPRYFNAKTKMIVGKKGIGGGGKAKPMFVQFVLEPLWQVYQGALGGDKGLVEKVIKSFNLQIPARELQNRDSKVVLQAVMSRWLPLSDAILSMVVKCMPDPVAAQGSRISRLIPQHEVGSENGVDRRVLEEAELVRKSVEGCDWRGEVPCVAFVAKMFALPVKMLPPPQVGEFVGSFGEEGEGESDECFLAFARIFSGVLSVGQRVFVISALYDPLKGESMQKHIQEAELKSMYLMMGQGLKVVKSAKAGDVVAIRGLGQYILKSATLSSTRNCWPFSSMAFQVAPILRVAIEPSDPADMGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKDRFAKVSLEVSPPLVSYKETIEGEVSNMLENLKVLSKNLDYVEKTTPNGRCVVRVQVMKLLPSLTKVLDESAELLGDILGIKSGQTVKSLETQRTNILENENPAEVIKKRIMEAIESDILCRIENDEDQAEKCRLKWLKLLRRIWALGPSYTGTNVLFTPDIKAESTDSYVLIRGSSQLSERLGFVADSGNSNSVSETSSNESQVLYMDAERLESNVITGFQLATSAGPLCDEPMWGLAFVIEARISSSTGHHDESETHQQSDQYGIFAGQVIATVKDACRTAVLKNKPRLVEAMYFCELNTPTEYLGPMYGVLSRRRARILKEEMQEGSPFFTVHAYVPVSESFGFTDELRSKTSGAASALLVLSHWEALLEDPFFVPKTEEEIEEFGDGSSVLPNTARKLIDTVRRRKGLPVEEKVVQHGTKQRTLARKV 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03927 1026 FunFam Elongation factor like GTPase 1 226 333 - -
Vifa4g03927 1026 CDD EF2_II 398 520 - -
Vifa4g03927 1026 Coils Coil 612 632 - -
Vifa4g03927 1026 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 348 IPR027417 -
Vifa4g03927 1026 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 7 1025 - -
Vifa4g03927 1026 SMART EFG_C_a 884 973 IPR000640 -
Vifa4g03927 1026 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 11 241 IPR000795 GO:0003924|GO:0005525
Vifa4g03927 1026 SUPERFAMILY Translation proteins 394 529 IPR009000 -
Vifa4g03927 1026 Gene3D - 4 207 IPR027417 -
Vifa4g03927 1026 NCBIfam small GTP-binding protein domain 13 143 IPR005225 GO:0005525
Vifa4g03927 1026 Pfam Elongation factor Tu GTP binding domain 12 343 IPR000795 GO:0003924|GO:0005525
Vifa4g03927 1026 CDD aeEF2_snRNP_like_IV 606 891 - -
Vifa4g03927 1026 SUPERFAMILY Ribosomal protein S5 domain 2-like 609 886 IPR020568 -
Vifa4g03927 1026 Gene3D Elongation Factor G (Translational Gtpase), domain 3 534 610 - -
Vifa4g03927 1026 PRINTS GTP-binding elongation factor signature 61 69 IPR000795 GO:0003924|GO:0005525
Vifa4g03927 1026 PRINTS GTP-binding elongation factor signature 133 142 IPR000795 GO:0003924|GO:0005525
Vifa4g03927 1026 PRINTS GTP-binding elongation factor signature 81 91 IPR000795 GO:0003924|GO:0005525
Vifa4g03927 1026 PRINTS GTP-binding elongation factor signature 15 28 IPR000795 GO:0003924|GO:0005525
Vifa4g03927 1026 PRINTS GTP-binding elongation factor signature 97 108 IPR000795 GO:0003924|GO:0005525
Vifa4g03927 1026 FunFam Translation elongation factor 2 534 610 - -
Vifa4g03927 1026 SUPERFAMILY EF-G C-terminal domain-like 533 607 IPR035647 -
Vifa4g03927 1026 CDD EF2_snRNP_III 535 606 - -
Vifa4g03927 1026 Gene3D - 631 881 IPR014721 -
Vifa4g03927 1026 Gene3D - 883 1017 - -
Vifa4g03927 1026 Pfam Elongation factor G C-terminus 885 965 IPR000640 -
Vifa4g03927 1026 Pfam Elongation factor Tu domain 2 439 517 IPR004161 GO:0005525
Vifa4g03927 1026 CDD EF2 14 234 - -
Vifa4g03927 1026 Gene3D Yeast translation eEF2 (G' domain) 226 333 - -
Vifa4g03927 1026 CDD eEF2_snRNP_like_C 887 965 - -
Vifa4g03927 1026 FunFam Elongation factor like GTPase 1 883 1018 - -
Vifa4g03927 1026 Gene3D Translation factors 350 532 - -
Vifa4g03927 1026 SUPERFAMILY EF-G C-terminal domain-like 887 985 IPR035647 -
Vifa4g03927 1026 FunFam Elongation factor 2-like protein 4 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03927 Vifa-Chr4 1254769184 1254772264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03927 7 1026 Eukaryotic Initiation Factors Gene Family AT3G22980 68.798 0.0 1431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03927 K14536 - pvu:PHAVU_003G003900g 1623.22