Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03925 ATGGAACGGTACGGCCGAGTGAACGAAGGGTCGCAGTCTGATCCGACGCCGGAATGGACTGTTGCTGCTGGAGAGGTGACGAATGAAGGGTATGGATTGGTGGGTGGTGAATCGTATCCTCTGCGACCTGATGAAGCTGATTGTATCTATTATTTGAGGACGGGTTTTTGCGGTTATGGTTCGAGGTGTCGGTTTAACCATCCACGTGACCGTGGCGCGGTTATTGGAGCTGCGAGGATTGCTGGGGAGTATCCGGAACGAGTTGGACAACCGCTGTGCCAGTATTACATAAGGACGGGATCGTGCAAATTTGGTGCTTCATGCAAGTATCACCATCCTAAACAAACAGCAGGAGTTATTGCCCCCGTGTCGCTGAATTATTATGGATATCCGTTGCGAGTGGGTGAGAAAGACTGTACCTACTATGTGAAAACAGGACAATGCAAGTTTGGTGTTACTTGTAAATTCCATCATCCACAGCCCACCGGTGTCCAAATGCTAGCACCATCACCAGCTCCCCAAGTTTCACCTCTGTCTGTGCCAGTACCTTCACCAATCTATCAAACTGTACAGCCTCCATCCGGCCCTTCACAACAACAATACAGTGTCCTGGTCGCGAGGCCACCTGTGCTGCATGGCTCGTTTGTCCAGGGTCCATACGGGCCTTTGGTAGTGTCCCCCACCATGGTACCTTTTCAAGGCTGGAGCCCTTATCATCAGGCTGCAAGTCCTGTGCTTCCTACGAGTACTCCGTTGAGCATTGCTTCGCCACAGATTTATGGGATAACTCAGCTACCTTCACCGACTACTGCCTTTACTGGACTTTTTCAACCTTCTGGTTCCTCAACTGGTCCTTCAGGCAGTAGTCAGAAGGAACAGTCATTACCCGAAAGGCCTGATCAGCAGGAATGTCATCATTACATGAAAACCGGGGAGTGTAAATTTGGTTCTTCATGTAGATATCACCATCCTCGGGACACGGGTGCACCAAAAGTGATCTTTAGTCCTGCCGGTCTTCCTCTGCGCCCGGGGGCACAACCTTGCACTCATTATACGCAGCGTGGAATTTGTAAGTTTGGATCTGCATGCAGATTTGATCATCCTATGGCATCCCTGAGTTACAGTCCATCTGCTTCTTCCCTATCTGATATGCCAGTTGCACCCTATCCCGTCGGCTTCTCCATTGGTACCCTTGCTCCATCATCCTCATCATCTGAGTTGAGGCCTGAACTTGTCTTAGGATCCAGCATAGAGTCCGCCTCATCCAGAATGTCATCATCAGTGAGCACATTGACTGCATTAGCTGGGTTAACTTTATCAACTGTTGTCCCGGTTTCTCAATCAAGTAGCCAGCCATCTGCTCAGAGTTCCAGTTCTTTAGCAACTCCCAGTGCCACCACAAGTAGCACTGTCTTTCACACCTCAAGCTAA 1431 0.4983 MERYGRVNEGSQSDPTPEWTVAAGEVTNEGYGLVGGESYPLRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARIAGEYPERVGQPLCQYYIRTGSCKFGASCKYHHPKQTAGVIAPVSLNYYGYPLRVGEKDCTYYVKTGQCKFGVTCKFHHPQPTGVQMLAPSPAPQVSPLSVPVPSPIYQTVQPPSGPSQQQYSVLVARPPVLHGSFVQGPYGPLVVSPTMVPFQGWSPYHQAASPVLPTSTPLSIASPQIYGITQLPSPTTAFTGLFQPSGSSTGPSGSSQKEQSLPERPDQQECHHYMKTGECKFGSSCRYHHPRDTGAPKVIFSPAGLPLRPGAQPCTHYTQRGICKFGSACRFDHPMASLSYSPSASSLSDMPVAPYPVGFSIGTLAPSSSSSELRPELVLGSSIESASSRMSSSVSTLTALAGLTLSTVVPVSQSSSQPSAQSSSSLATPSATTSSTVFHTSS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03925 476 ProSiteProfiles Zinc finger C3H1-type profile. 298 326 IPR000571 GO:0046872
Vifa4g03925 476 MobiDBLite consensus disorder prediction 271 300 - -
Vifa4g03925 476 SUPERFAMILY CCCH zinc finger 300 326 IPR036855 GO:0046872
Vifa4g03925 476 MobiDBLite consensus disorder prediction 271 295 - -
Vifa4g03925 476 ProSiteProfiles Zinc finger C3H1-type profile. 87 115 IPR000571 GO:0046872
Vifa4g03925 476 ProSiteProfiles Zinc finger C3H1-type profile. 342 370 IPR000571 GO:0046872
Vifa4g03925 476 ProSiteProfiles Zinc finger C3H1-type profile. 42 70 IPR000571 GO:0046872
Vifa4g03925 476 SUPERFAMILY CCCH zinc finger 134 161 IPR036855 GO:0046872
Vifa4g03925 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 136 160 IPR000571 GO:0046872
Vifa4g03925 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 44 69 IPR000571 GO:0046872
Vifa4g03925 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 90 114 IPR000571 GO:0046872
Vifa4g03925 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 346 369 IPR000571 GO:0046872
Vifa4g03925 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 325 IPR000571 GO:0046872
Vifa4g03925 476 PANTHER PROTEIN PHOSPHATASE RELATED 35 409 - -
Vifa4g03925 476 Gene3D - 122 170 - -
Vifa4g03925 476 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872
Vifa4g03925 476 MobiDBLite consensus disorder prediction 445 476 - -
Vifa4g03925 476 SUPERFAMILY CCCH zinc finger 345 372 IPR036855 GO:0046872
Vifa4g03925 476 SMART c3hfinal6 135 160 IPR000571 GO:0046872
Vifa4g03925 476 SMART c3hfinal6 87 114 IPR000571 GO:0046872
Vifa4g03925 476 SMART c3hfinal6 42 69 IPR000571 GO:0046872
Vifa4g03925 476 SMART c3hfinal6 342 369 IPR000571 GO:0046872
Vifa4g03925 476 SMART c3hfinal6 298 325 IPR000571 GO:0046872
Vifa4g03925 476 SUPERFAMILY CCCH zinc finger 45 70 IPR036855 GO:0046872
Vifa4g03925 476 Gene3D - 293 383 - -
Vifa4g03925 476 Gene3D - 42 121 - -
Vifa4g03925 476 SUPERFAMILY CCCH zinc finger 90 115 IPR036855 GO:0046872
Vifa4g03925 476 FunFam Zinc finger nuclease 2 41 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03925 Vifa-Chr4 1253782400 1253785684 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03925 1 438 C2H2 Transcription Factor Family AT5G18550 52.298 1.48e-140 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa4g03925 zf-CCCH 3.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03925 - - mtr:11409008 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03925 4 1253782400 1253785684 Vifa1g10118 1 1671491084 1671496018 PCT