Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa4g03925 | ATGGAACGGTACGGCCGAGTGAACGAAGGGTCGCAGTCTGATCCGACGCCGGAATGGACTGTTGCTGCTGGAGAGGTGACGAATGAAGGGTATGGATTGGTGGGTGGTGAATCGTATCCTCTGCGACCTGATGAAGCTGATTGTATCTATTATTTGAGGACGGGTTTTTGCGGTTATGGTTCGAGGTGTCGGTTTAACCATCCACGTGACCGTGGCGCGGTTATTGGAGCTGCGAGGATTGCTGGGGAGTATCCGGAACGAGTTGGACAACCGCTGTGCCAGTATTACATAAGGACGGGATCGTGCAAATTTGGTGCTTCATGCAAGTATCACCATCCTAAACAAACAGCAGGAGTTATTGCCCCCGTGTCGCTGAATTATTATGGATATCCGTTGCGAGTGGGTGAGAAAGACTGTACCTACTATGTGAAAACAGGACAATGCAAGTTTGGTGTTACTTGTAAATTCCATCATCCACAGCCCACCGGTGTCCAAATGCTAGCACCATCACCAGCTCCCCAAGTTTCACCTCTGTCTGTGCCAGTACCTTCACCAATCTATCAAACTGTACAGCCTCCATCCGGCCCTTCACAACAACAATACAGTGTCCTGGTCGCGAGGCCACCTGTGCTGCATGGCTCGTTTGTCCAGGGTCCATACGGGCCTTTGGTAGTGTCCCCCACCATGGTACCTTTTCAAGGCTGGAGCCCTTATCATCAGGCTGCAAGTCCTGTGCTTCCTACGAGTACTCCGTTGAGCATTGCTTCGCCACAGATTTATGGGATAACTCAGCTACCTTCACCGACTACTGCCTTTACTGGACTTTTTCAACCTTCTGGTTCCTCAACTGGTCCTTCAGGCAGTAGTCAGAAGGAACAGTCATTACCCGAAAGGCCTGATCAGCAGGAATGTCATCATTACATGAAAACCGGGGAGTGTAAATTTGGTTCTTCATGTAGATATCACCATCCTCGGGACACGGGTGCACCAAAAGTGATCTTTAGTCCTGCCGGTCTTCCTCTGCGCCCGGGGGCACAACCTTGCACTCATTATACGCAGCGTGGAATTTGTAAGTTTGGATCTGCATGCAGATTTGATCATCCTATGGCATCCCTGAGTTACAGTCCATCTGCTTCTTCCCTATCTGATATGCCAGTTGCACCCTATCCCGTCGGCTTCTCCATTGGTACCCTTGCTCCATCATCCTCATCATCTGAGTTGAGGCCTGAACTTGTCTTAGGATCCAGCATAGAGTCCGCCTCATCCAGAATGTCATCATCAGTGAGCACATTGACTGCATTAGCTGGGTTAACTTTATCAACTGTTGTCCCGGTTTCTCAATCAAGTAGCCAGCCATCTGCTCAGAGTTCCAGTTCTTTAGCAACTCCCAGTGCCACCACAAGTAGCACTGTCTTTCACACCTCAAGCTAA | 1431 | 0.4983 | MERYGRVNEGSQSDPTPEWTVAAGEVTNEGYGLVGGESYPLRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARIAGEYPERVGQPLCQYYIRTGSCKFGASCKYHHPKQTAGVIAPVSLNYYGYPLRVGEKDCTYYVKTGQCKFGVTCKFHHPQPTGVQMLAPSPAPQVSPLSVPVPSPIYQTVQPPSGPSQQQYSVLVARPPVLHGSFVQGPYGPLVVSPTMVPFQGWSPYHQAASPVLPTSTPLSIASPQIYGITQLPSPTTAFTGLFQPSGSSTGPSGSSQKEQSLPERPDQQECHHYMKTGECKFGSSCRYHHPRDTGAPKVIFSPAGLPLRPGAQPCTHYTQRGICKFGSACRFDHPMASLSYSPSASSLSDMPVAPYPVGFSIGTLAPSSSSSELRPELVLGSSIESASSRMSSSVSTLTALAGLTLSTVVPVSQSSSQPSAQSSSSLATPSATTSSTVFHTSS | 476 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa4g03925 | 476 | ProSiteProfiles | Zinc finger C3H1-type profile. | 298 | 326 | IPR000571 | GO:0046872 | |
Vifa4g03925 | 476 | MobiDBLite | consensus disorder prediction | 271 | 300 | - | - | |
Vifa4g03925 | 476 | SUPERFAMILY | CCCH zinc finger | 300 | 326 | IPR036855 | GO:0046872 | |
Vifa4g03925 | 476 | MobiDBLite | consensus disorder prediction | 271 | 295 | - | - | |
Vifa4g03925 | 476 | ProSiteProfiles | Zinc finger C3H1-type profile. | 87 | 115 | IPR000571 | GO:0046872 | |
Vifa4g03925 | 476 | ProSiteProfiles | Zinc finger C3H1-type profile. | 342 | 370 | IPR000571 | GO:0046872 | |
Vifa4g03925 | 476 | ProSiteProfiles | Zinc finger C3H1-type profile. | 42 | 70 | IPR000571 | GO:0046872 | |
Vifa4g03925 | 476 | SUPERFAMILY | CCCH zinc finger | 134 | 161 | IPR036855 | GO:0046872 | |
Vifa4g03925 | 476 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 136 | 160 | IPR000571 | GO:0046872 | |
Vifa4g03925 | 476 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 44 | 69 | IPR000571 | GO:0046872 | |
Vifa4g03925 | 476 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 90 | 114 | IPR000571 | GO:0046872 | |
Vifa4g03925 | 476 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 346 | 369 | IPR000571 | GO:0046872 | |
Vifa4g03925 | 476 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 301 | 325 | IPR000571 | GO:0046872 | |
Vifa4g03925 | 476 | PANTHER | PROTEIN PHOSPHATASE RELATED | 35 | 409 | - | - | |
Vifa4g03925 | 476 | Gene3D | - | 122 | 170 | - | - | |
Vifa4g03925 | 476 | ProSiteProfiles | Zinc finger C3H1-type profile. | 133 | 161 | IPR000571 | GO:0046872 | |
Vifa4g03925 | 476 | MobiDBLite | consensus disorder prediction | 445 | 476 | - | - | |
Vifa4g03925 | 476 | SUPERFAMILY | CCCH zinc finger | 345 | 372 | IPR036855 | GO:0046872 | |
Vifa4g03925 | 476 | SMART | c3hfinal6 | 135 | 160 | IPR000571 | GO:0046872 | |
Vifa4g03925 | 476 | SMART | c3hfinal6 | 87 | 114 | IPR000571 | GO:0046872 | |
Vifa4g03925 | 476 | SMART | c3hfinal6 | 42 | 69 | IPR000571 | GO:0046872 | |
Vifa4g03925 | 476 | SMART | c3hfinal6 | 342 | 369 | IPR000571 | GO:0046872 | |
Vifa4g03925 | 476 | SMART | c3hfinal6 | 298 | 325 | IPR000571 | GO:0046872 | |
Vifa4g03925 | 476 | SUPERFAMILY | CCCH zinc finger | 45 | 70 | IPR036855 | GO:0046872 | |
Vifa4g03925 | 476 | Gene3D | - | 293 | 383 | - | - | |
Vifa4g03925 | 476 | Gene3D | - | 42 | 121 | - | - | |
Vifa4g03925 | 476 | SUPERFAMILY | CCCH zinc finger | 90 | 115 | IPR036855 | GO:0046872 | |
Vifa4g03925 | 476 | FunFam | Zinc finger nuclease 2 | 41 | 118 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa4g03925 | Vifa-Chr4 | 1253782400 | 1253785684 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa4g03925 | 1 | 438 | C2H2 Transcription Factor Family | AT5G18550 | 52.298 | 1.48e-140 | 409 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Vifa4g03925 | zf-CCCH | 3.3e-07 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa4g03925 | - | - | mtr:11409008 | 687.952 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa4g03925 | 4 | 1253782400 | 1253785684 | Vifa1g10118 | 1 | 1671491084 | 1671496018 | PCT |