Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa4g03924 | ATGGAACGGTACGGCCGAGTGAACGAAGGGTCGCAGTCTGATCCGACGCCGGAATGGACTGTTGCTGCTGGAGAGGTGACGAATGAAGGGTATGGATTGGTGGGTGGTGAATCGTATCCTCTGCGACCTGATGAAGCTGATTGTATCTATTATTTGAGGACGGGTTTTTGCGGTTATGGTTCGAGGTGTCGGTTTAACCATCCACGTGACCGTGGCGCGGTTATTGGAGCTGCGAGGATTGCTGGGGAGTATCCGGAACGAGTTGGACAACCGCTGTGCCAGTATTACATAAGGACGGGATCGTGCAAATTTGGTGCTTCATGCAAGTATCACCATCCTAAACAAACAGCAGGAGTTATTGCCCCCGTGTCGCTGAATTATTATGGATATCCGTTGCGAGTGGGTGAGAAAGACTGTACCTACTATGTGAAAACAGGACAATGCAAGTTTGGTGTTACTTGTAAATTCCATCATCCACAGCCCACCGGTGTCCAAATGCTAGCACCATCACCAGCTCCCCAAGTTTCACCTCTGTCTGTGCCAGTACCTTCACCAATCTATCAAACTGTACAGCCTCCATCCGGCCCTTCACAACAACAATACAGTGTCCTGGTCGCGAGGCCACCTGTGCTGCATGGCTCGTTTGTCCAGGGTCCATACGGGCCTTTGGTAGTGTCCCCCACCATGGTACCTTTTCAAGGCTGGAGCCCTTATCATCAGGCTCAGGCTGCAAGTCCTGTGCTTCCTACGAGTACTCCGTTGAGCATTGCTTCGCCACAGATTTATGGGATAACTCAGCTACCTTCACCGACTACTGCCTTTACTGGACTTTTTCAACCTTCTGGTTCCTCAACTGGTCCTTCAGGCAGTAGTCAGAAGGAACAGTCATTACCCGAAAGGCCTGATCAGCAGGAATGTCATCATTACATGAAAACCGGGGAGTGTAAATTTGGTTCTTCATGTAGATATCACCATCCTCGGGACACGGGTGCACCAAAAGTGATCTTTAGTCCTGCCGGTCTTCCTCTGCGCCCGGGGGCACAACCTTGCACTCATTATACGCAGCGTGGAATTTGTAAGTTTGGATCTGCATGCAGATTTGATCATCCTATGGCATCCCTGAGTTACAGTCCATCTGCTTCTTCCCTATCTGATATGCCAGTTGCACCCTATCCCGTCGGCTTCTCCATTGGTACCCTTGCTCCATCATCCTCATCATCTGAGTTGAGGCCTGAACTTGTCTTAGGATCCAGCATAGAGTCCGCCTCATCCAGAATGTCATCATCAGTGAGCACATTGACTGCATTAGCTGGGTTAACTTTATCAACTGTTGTCCCGGTTTCTCAATCAAGTAGCCAGCCATCTGCTCAGAGTTCCAGTTCTTTAGCAACTCCCAGTGCCACCACAAGTAGCACTGTCTTTCACACCTCAAGCTAA | 1437 | 0.499 | MERYGRVNEGSQSDPTPEWTVAAGEVTNEGYGLVGGESYPLRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARIAGEYPERVGQPLCQYYIRTGSCKFGASCKYHHPKQTAGVIAPVSLNYYGYPLRVGEKDCTYYVKTGQCKFGVTCKFHHPQPTGVQMLAPSPAPQVSPLSVPVPSPIYQTVQPPSGPSQQQYSVLVARPPVLHGSFVQGPYGPLVVSPTMVPFQGWSPYHQAQAASPVLPTSTPLSIASPQIYGITQLPSPTTAFTGLFQPSGSSTGPSGSSQKEQSLPERPDQQECHHYMKTGECKFGSSCRYHHPRDTGAPKVIFSPAGLPLRPGAQPCTHYTQRGICKFGSACRFDHPMASLSYSPSASSLSDMPVAPYPVGFSIGTLAPSSSSSELRPELVLGSSIESASSRMSSSVSTLTALAGLTLSTVVPVSQSSSQPSAQSSSSLATPSATTSSTVFHTSS | 478 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa4g03924 | 478 | ProSiteProfiles | Zinc finger C3H1-type profile. | 87 | 115 | IPR000571 | GO:0046872 | |
Vifa4g03924 | 478 | MobiDBLite | consensus disorder prediction | 447 | 478 | - | - | |
Vifa4g03924 | 478 | SUPERFAMILY | CCCH zinc finger | 302 | 328 | IPR036855 | GO:0046872 | |
Vifa4g03924 | 478 | Gene3D | - | 122 | 170 | - | - | |
Vifa4g03924 | 478 | ProSiteProfiles | Zinc finger C3H1-type profile. | 42 | 70 | IPR000571 | GO:0046872 | |
Vifa4g03924 | 478 | Gene3D | - | 296 | 385 | - | - | |
Vifa4g03924 | 478 | Gene3D | - | 42 | 121 | - | - | |
Vifa4g03924 | 478 | SMART | c3hfinal6 | 135 | 160 | IPR000571 | GO:0046872 | |
Vifa4g03924 | 478 | SMART | c3hfinal6 | 87 | 114 | IPR000571 | GO:0046872 | |
Vifa4g03924 | 478 | SMART | c3hfinal6 | 42 | 69 | IPR000571 | GO:0046872 | |
Vifa4g03924 | 478 | SMART | c3hfinal6 | 300 | 327 | IPR000571 | GO:0046872 | |
Vifa4g03924 | 478 | SMART | c3hfinal6 | 344 | 371 | IPR000571 | GO:0046872 | |
Vifa4g03924 | 478 | SUPERFAMILY | CCCH zinc finger | 134 | 161 | IPR036855 | GO:0046872 | |
Vifa4g03924 | 478 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 136 | 160 | IPR000571 | GO:0046872 | |
Vifa4g03924 | 478 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 348 | 371 | IPR000571 | GO:0046872 | |
Vifa4g03924 | 478 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 44 | 69 | IPR000571 | GO:0046872 | |
Vifa4g03924 | 478 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 303 | 327 | IPR000571 | GO:0046872 | |
Vifa4g03924 | 478 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 90 | 114 | IPR000571 | GO:0046872 | |
Vifa4g03924 | 478 | ProSiteProfiles | Zinc finger C3H1-type profile. | 344 | 372 | IPR000571 | GO:0046872 | |
Vifa4g03924 | 478 | MobiDBLite | consensus disorder prediction | 273 | 302 | - | - | |
Vifa4g03924 | 478 | ProSiteProfiles | Zinc finger C3H1-type profile. | 133 | 161 | IPR000571 | GO:0046872 | |
Vifa4g03924 | 478 | MobiDBLite | consensus disorder prediction | 273 | 297 | - | - | |
Vifa4g03924 | 478 | SUPERFAMILY | CCCH zinc finger | 347 | 374 | IPR036855 | GO:0046872 | |
Vifa4g03924 | 478 | PANTHER | PROTEIN PHOSPHATASE RELATED | 35 | 415 | - | - | |
Vifa4g03924 | 478 | SUPERFAMILY | CCCH zinc finger | 45 | 70 | IPR036855 | GO:0046872 | |
Vifa4g03924 | 478 | ProSiteProfiles | Zinc finger C3H1-type profile. | 300 | 328 | IPR000571 | GO:0046872 | |
Vifa4g03924 | 478 | SUPERFAMILY | CCCH zinc finger | 90 | 115 | IPR036855 | GO:0046872 | |
Vifa4g03924 | 478 | FunFam | Zinc finger nuclease 2 | 41 | 118 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa4g03924 | Vifa-Chr4 | 1253782400 | 1253785684 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa4g03924 | 1 | 440 | C2H2 Transcription Factor Family | AT5G18550 | 52.505 | 4.27e-140 | 409 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Vifa4g03924 | zf-CCCH | 3.3e-07 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa4g03924 | - | - | mtr:11409008 | 691.419 |