Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03924 ATGGAACGGTACGGCCGAGTGAACGAAGGGTCGCAGTCTGATCCGACGCCGGAATGGACTGTTGCTGCTGGAGAGGTGACGAATGAAGGGTATGGATTGGTGGGTGGTGAATCGTATCCTCTGCGACCTGATGAAGCTGATTGTATCTATTATTTGAGGACGGGTTTTTGCGGTTATGGTTCGAGGTGTCGGTTTAACCATCCACGTGACCGTGGCGCGGTTATTGGAGCTGCGAGGATTGCTGGGGAGTATCCGGAACGAGTTGGACAACCGCTGTGCCAGTATTACATAAGGACGGGATCGTGCAAATTTGGTGCTTCATGCAAGTATCACCATCCTAAACAAACAGCAGGAGTTATTGCCCCCGTGTCGCTGAATTATTATGGATATCCGTTGCGAGTGGGTGAGAAAGACTGTACCTACTATGTGAAAACAGGACAATGCAAGTTTGGTGTTACTTGTAAATTCCATCATCCACAGCCCACCGGTGTCCAAATGCTAGCACCATCACCAGCTCCCCAAGTTTCACCTCTGTCTGTGCCAGTACCTTCACCAATCTATCAAACTGTACAGCCTCCATCCGGCCCTTCACAACAACAATACAGTGTCCTGGTCGCGAGGCCACCTGTGCTGCATGGCTCGTTTGTCCAGGGTCCATACGGGCCTTTGGTAGTGTCCCCCACCATGGTACCTTTTCAAGGCTGGAGCCCTTATCATCAGGCTCAGGCTGCAAGTCCTGTGCTTCCTACGAGTACTCCGTTGAGCATTGCTTCGCCACAGATTTATGGGATAACTCAGCTACCTTCACCGACTACTGCCTTTACTGGACTTTTTCAACCTTCTGGTTCCTCAACTGGTCCTTCAGGCAGTAGTCAGAAGGAACAGTCATTACCCGAAAGGCCTGATCAGCAGGAATGTCATCATTACATGAAAACCGGGGAGTGTAAATTTGGTTCTTCATGTAGATATCACCATCCTCGGGACACGGGTGCACCAAAAGTGATCTTTAGTCCTGCCGGTCTTCCTCTGCGCCCGGGGGCACAACCTTGCACTCATTATACGCAGCGTGGAATTTGTAAGTTTGGATCTGCATGCAGATTTGATCATCCTATGGCATCCCTGAGTTACAGTCCATCTGCTTCTTCCCTATCTGATATGCCAGTTGCACCCTATCCCGTCGGCTTCTCCATTGGTACCCTTGCTCCATCATCCTCATCATCTGAGTTGAGGCCTGAACTTGTCTTAGGATCCAGCATAGAGTCCGCCTCATCCAGAATGTCATCATCAGTGAGCACATTGACTGCATTAGCTGGGTTAACTTTATCAACTGTTGTCCCGGTTTCTCAATCAAGTAGCCAGCCATCTGCTCAGAGTTCCAGTTCTTTAGCAACTCCCAGTGCCACCACAAGTAGCACTGTCTTTCACACCTCAAGCTAA 1437 0.499 MERYGRVNEGSQSDPTPEWTVAAGEVTNEGYGLVGGESYPLRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARIAGEYPERVGQPLCQYYIRTGSCKFGASCKYHHPKQTAGVIAPVSLNYYGYPLRVGEKDCTYYVKTGQCKFGVTCKFHHPQPTGVQMLAPSPAPQVSPLSVPVPSPIYQTVQPPSGPSQQQYSVLVARPPVLHGSFVQGPYGPLVVSPTMVPFQGWSPYHQAQAASPVLPTSTPLSIASPQIYGITQLPSPTTAFTGLFQPSGSSTGPSGSSQKEQSLPERPDQQECHHYMKTGECKFGSSCRYHHPRDTGAPKVIFSPAGLPLRPGAQPCTHYTQRGICKFGSACRFDHPMASLSYSPSASSLSDMPVAPYPVGFSIGTLAPSSSSSELRPELVLGSSIESASSRMSSSVSTLTALAGLTLSTVVPVSQSSSQPSAQSSSSLATPSATTSSTVFHTSS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03924 478 ProSiteProfiles Zinc finger C3H1-type profile. 87 115 IPR000571 GO:0046872
Vifa4g03924 478 MobiDBLite consensus disorder prediction 447 478 - -
Vifa4g03924 478 SUPERFAMILY CCCH zinc finger 302 328 IPR036855 GO:0046872
Vifa4g03924 478 Gene3D - 122 170 - -
Vifa4g03924 478 ProSiteProfiles Zinc finger C3H1-type profile. 42 70 IPR000571 GO:0046872
Vifa4g03924 478 Gene3D - 296 385 - -
Vifa4g03924 478 Gene3D - 42 121 - -
Vifa4g03924 478 SMART c3hfinal6 135 160 IPR000571 GO:0046872
Vifa4g03924 478 SMART c3hfinal6 87 114 IPR000571 GO:0046872
Vifa4g03924 478 SMART c3hfinal6 42 69 IPR000571 GO:0046872
Vifa4g03924 478 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Vifa4g03924 478 SMART c3hfinal6 344 371 IPR000571 GO:0046872
Vifa4g03924 478 SUPERFAMILY CCCH zinc finger 134 161 IPR036855 GO:0046872
Vifa4g03924 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 136 160 IPR000571 GO:0046872
Vifa4g03924 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 348 371 IPR000571 GO:0046872
Vifa4g03924 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 44 69 IPR000571 GO:0046872
Vifa4g03924 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 327 IPR000571 GO:0046872
Vifa4g03924 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 90 114 IPR000571 GO:0046872
Vifa4g03924 478 ProSiteProfiles Zinc finger C3H1-type profile. 344 372 IPR000571 GO:0046872
Vifa4g03924 478 MobiDBLite consensus disorder prediction 273 302 - -
Vifa4g03924 478 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872
Vifa4g03924 478 MobiDBLite consensus disorder prediction 273 297 - -
Vifa4g03924 478 SUPERFAMILY CCCH zinc finger 347 374 IPR036855 GO:0046872
Vifa4g03924 478 PANTHER PROTEIN PHOSPHATASE RELATED 35 415 - -
Vifa4g03924 478 SUPERFAMILY CCCH zinc finger 45 70 IPR036855 GO:0046872
Vifa4g03924 478 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Vifa4g03924 478 SUPERFAMILY CCCH zinc finger 90 115 IPR036855 GO:0046872
Vifa4g03924 478 FunFam Zinc finger nuclease 2 41 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03924 Vifa-Chr4 1253782400 1253785684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03924 1 440 C2H2 Transcription Factor Family AT5G18550 52.505 4.27e-140 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa4g03924 zf-CCCH 3.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03924 - - mtr:11409008 691.419