Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03923 ATGTCAACCTCCAAAAAACCAACATCAGATTCATCTTTGAAAGCATATCATGAAACAAATCAAACACAAATGTGTCTGTCACTACTTCAAAGAAACACCAACACATTACCTAGTAGTGAAAAAAGAGGTAGAAGGAAACAAACCGAACCAGGAAGGTTTCTTGGTGTTAGAAGAAGACCTTGGGGTAGATATGCTGCTGAAATTAGAGACCCTACAACCAAAGAAAGACACTGGCTTGGTACTTTTGATACTGCTCAAGAAGCTGCTCTTGCTTATGATAGAGCTGCCATTTCCATGAAAGGAAATCAAGCTAGAACTAATTTCATTTACACTGATACTATCAACTTTCACACTCTTGTTTCTTCTCCTATTGATCTTCAAACTCTCTTACCAGCTTCACAGTTACTCACCAACACTACTCAAACCAATCAAAATACTACTTTTTCTCAACTAAACAACACTTCACTCACCTCTGGAAAAGATCAAAACATGATCATGACTACTTTTGATCATGAAAAAACAACATATGAATCATCCAAAAATCATGATGATAGTTTCTTCTTTTCCAATGACTCTAACTCTGGCTATCTTGAATGCATAGTTCCTGATAACTGTTTCAGAAACAGCAATGTTAGTACTGCTTCAAGTGATGAAAAAGTTGGTGATAGCAACAAATTTTCCATGGAGGGTCAATTTCAATCACATTTTGGCATCCCTTCATTTTCTCAAGAAATGCCAACAAGGGTCACTGGTTTTTCAGAGTTTTCTTATTGTCCAAGTGAAGGGTTCTTAGATTGGAATTCTAATGAACTTTCAGCTATATTCAACAACAATCCATTAACAGTTGAACATGAATGCATGGATATGGATACATTGATGTTTCCAAATTATCCCATCATTGAAAACCTAAGTCCAAGCTATGGAATACTCAATGATCAAGCTTCTTCTTCAACTAACTATTCTCCATCACTTGATTTTGGTTACCCTCTCTTTTGA 996 0.3594 MSTSKKPTSDSSLKAYHETNQTQMCLSLLQRNTNTLPSSEKRGRRKQTEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAAISMKGNQARTNFIYTDTINFHTLVSSPIDLQTLLPASQLLTNTTQTNQNTTFSQLNNTSLTSGKDQNMIMTTFDHEKTTYESSKNHDDSFFFSNDSNSGYLECIVPDNCFRNSNVSTASSDEKVGDSNKFSMEGQFQSHFGIPSFSQEMPTRVTGFSEFSYCPSEGFLDWNSNELSAIFNNNPLTVEHECMDMDTLMFPNYPIIENLSPSYGILNDQASSSTNYSPSLDFGYPLF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03923 331 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Vifa4g03923 331 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Vifa4g03923 331 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Vifa4g03923 331 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Vifa4g03923 331 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Vifa4g03923 331 Pfam AP2 domain 55 101 IPR001471 GO:0003700|GO:0006355
Vifa4g03923 331 FunFam Ethylene-responsive transcription factor 2 52 110 - -
Vifa4g03923 331 CDD AP2 52 108 IPR001471 GO:0003700|GO:0006355
Vifa4g03923 331 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 34 203 - -
Vifa4g03923 331 SUPERFAMILY DNA-binding domain 53 109 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03923 Vifa-Chr4 1252726415 1252727410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03923 18 207 AP2-EREBP Transcription Factor Family AT5G18560 46.552 3.30e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa4g03923 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03923 - - cam:101500468 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03923 4 1252726415 1252727410 Vifa1g10115 1 1670542239 1670543126 PCT