Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03912 ATGGGAAGATATCGTAGCCGTAGCAGAAGCTACAGCCCTCGCCGCCGTAGCAGAACCCCACCTCGCGGTCGCAAGCGTTATGATGATGAACGCTATCCGGACACCAGGTCTCGCAGAGACCGTCGCTCTCCTCTCCCTTCTGGCTTACTCGTTCGTAATCTCCCACTTGATGCTAGACCTGAAGATCTTAGGGGGCCCTTTGAACGCTATGGTCCTGTAAAGGATGTTTACCTTCCTAGAAATTATTACACTGGTGAACCTCGTGGCTTTGGATTCGTGAAATATCGGTACGGTGAAGATGCAGCTGAGGCAAAGCAACATCTGAATCATAGTGTCATTGGTGGACGTGAAATAAGAATTGTGTTTGCTGAGGAAAATAGGAAAACCCCTCAAGAAATGCGTGTCACTTCTCATGGAAGTAGCCGGAATGGAGGTGGTAGCAGCCGAAGGAGAGCTCGGTCAAGATCCCCACGACCCTACTCTAGGTCTCCATCACCTGCCAGGGACAATTCAAGGGATGACAGGGGTAGGGATGGTTATTCTCCAGAGCGATCAAGATCTTATTCTAGGTCTGTTTCTCCCGGTGTTGGGAAGGATGACAGGAGGTCCTCTCGTGCCTCTCTGGATGGTGGGAAGGATGACAGGAGGTCCTCTCGTGCCTCTCCGGGTGGTGGGAAGGACGACAGGAGGTCCCCTCGTGCCAGGGAGAATGGTCGAAGTCCAAATGTTAAGAAAGATCAATCACCTACCAGATCTGAGAGCCCTAGGGACAGAGATCGCAGTCCTTCAAGGTCTCGTTCGCGGTCATACAGTCCACGCTGA 822 0.5219 MGRYRSRSRSYSPRRRSRTPPRGRKRYDDERYPDTRSRRDRRSPLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHSVIGGREIRIVFAEENRKTPQEMRVTSHGSSRNGGGSSRRRARSRSPRPYSRSPSPARDNSRDDRGRDGYSPERSRSYSRSVSPGVGKDDRRSSRASLDGGKDDRRSSRASPGGGKDDRRSPRARENGRSPNVKKDQSPTRSESPRDRDRSPSRSRSRSYSPR 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03912 273 MobiDBLite consensus disorder prediction 167 184 - -
Vifa4g03912 273 MobiDBLite consensus disorder prediction 1 49 - -
Vifa4g03912 273 MobiDBLite consensus disorder prediction 133 147 - -
Vifa4g03912 273 MobiDBLite consensus disorder prediction 195 242 - -
Vifa4g03912 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Vifa4g03912 273 MobiDBLite consensus disorder prediction 1 21 - -
Vifa4g03912 273 MobiDBLite consensus disorder prediction 22 45 - -
Vifa4g03912 273 SUPERFAMILY RNA-binding domain, RBD 49 154 IPR035979 GO:0003676
Vifa4g03912 273 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 47 265 - -
Vifa4g03912 273 Gene3D - 2 137 IPR012677 -
Vifa4g03912 273 MobiDBLite consensus disorder prediction 249 266 - -
Vifa4g03912 273 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 139 - -
Vifa4g03912 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 119 IPR000504 GO:0003723
Vifa4g03912 273 MobiDBLite consensus disorder prediction 125 273 - -
Vifa4g03912 273 SMART rrm1_1 48 121 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03912 Vifa-Chr4 1249397629 1249401577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03912 51 109 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 1.84e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03912 K12900 - gmx:100795738 259.996