Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03911 ATGGGAAGATATCGTAGCCGTAGCAGAAGCTACAGCCCTCGCCGCCGTAGCAGAACCCCACCTCGCGGTCGCAAGCGTTATGATGATGAACGCTATCCGGACACCAGGTCTCGCAGAGACCGTCGCTCTCCTCTCCCTTCTGGCTTACTCGTTCGTAATCTCCCACTTGATGCTAGACCTGAAGATCTTAGGGGGCCCTTTGAACGCTATGGTCCTGTAAAGGATGTTTACCTTCCTAGAAATTATTACACTGGTGAACCTCGTGGCTTTGGATTCGTGAAATATCGGTACGGTGAAGATGCAGCTGAGGCAAAGCAACATCTGAATCATAGTGTCATTGGTGGACGTGAAATAAGAATTGTGTTTGCTGAGGAAAATAGGAAAACCCCTCAAGAAATGCGTGTCACTTCTCATGGAAGTAGCCGGAATGGAGGTGGTAGCAGCCGAAGGAGAGCTCGGTCAAGATCCCCACGACGTCGGTATCGATCCTACTCTAGGTCTCCATCACCTGCCAGGGACAATTCAAGGGATGACAGGGGTAGGGATGGTTATTCTCCAGAGCGATCAAGATCTTATTCTAGGTCTGTTTCTCCCGGTGTTGGGAAGGATGACAGGAGGTCCTCTCGTGCCTCTCTGGATGGTGGGAAGGATGACAGGAGGTCCTCTCGTGCCTCTCCGGGTGGTGGGAAGGACGACAGGAGGTCCCCTCGTGCCAGGGAGAATGGTCGAAGTCCAAATGTTAAGAAAGATCAATCACCTACCAGATCTGAGAGCCCTAGGGACAGAGATCGCAGTCCTTCAAGGTCTCGTTCGCGGTCATACAGTCCACGCTGA 834 0.5216 MGRYRSRSRSYSPRRRSRTPPRGRKRYDDERYPDTRSRRDRRSPLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHSVIGGREIRIVFAEENRKTPQEMRVTSHGSSRNGGGSSRRRARSRSPRRRYRSYSRSPSPARDNSRDDRGRDGYSPERSRSYSRSVSPGVGKDDRRSSRASLDGGKDDRRSSRASPGGGKDDRRSPRARENGRSPNVKKDQSPTRSESPRDRDRSPSRSRSRSYSPR 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03911 277 MobiDBLite consensus disorder prediction 171 188 - -
Vifa4g03911 277 MobiDBLite consensus disorder prediction 1 49 - -
Vifa4g03911 277 MobiDBLite consensus disorder prediction 133 147 - -
Vifa4g03911 277 MobiDBLite consensus disorder prediction 199 246 - -
Vifa4g03911 277 SUPERFAMILY RNA-binding domain, RBD 49 154 IPR035979 GO:0003676
Vifa4g03911 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Vifa4g03911 277 MobiDBLite consensus disorder prediction 1 21 - -
Vifa4g03911 277 MobiDBLite consensus disorder prediction 148 162 - -
Vifa4g03911 277 MobiDBLite consensus disorder prediction 22 45 - -
Vifa4g03911 277 MobiDBLite consensus disorder prediction 253 270 - -
Vifa4g03911 277 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 139 - -
Vifa4g03911 277 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 47 269 - -
Vifa4g03911 277 MobiDBLite consensus disorder prediction 125 277 - -
Vifa4g03911 277 Gene3D - 2 135 IPR012677 -
Vifa4g03911 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 119 IPR000504 GO:0003723
Vifa4g03911 277 SMART rrm1_1 48 121 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03911 Vifa-Chr4 1249397629 1249401577 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03911 51 109 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 2.01e-06 46.6