Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03908 ATGATCATAGTTTGTTTGATTGATTTAAATTTAGTTGTTGGGGTTGATGTAAATTTGAAGGCTGCACATCTTTTGGGAGACTGGTGGAAGTGGGATTTTGGAAGTACACTTGGCTACACCTTGCACTCTACGGTTTTGAGATTTGAATCTTTGATGGAATGCAACAAAGAAGAGGCCTTAAGGGCCAAGGACATTGCTGAAAAGAAGATGGAAAACAAGGATTTCGCAGGGGCTCGTAAATTTGCTCTTAAGGCTAAGCAGTTGTATCCTGATTTGGATAATATATCTCAAATGCTCATTGTTTGTGATGTGCACTGCTCTGCAGAGAAGATAGTGTTCGAAAATGAGAAGGACTGGTATGGAATTCTTCAGCTAGAACACACAGCTGGTGTTGCAATGATTAAGAAGCAATTCCGAAAGTTTGCTCTTCAGCTTCATCCCGATAAAAACAAGTTTTCTGGTGCTGAATCTGCGTTTAAGCTGATTGAGGAAGCTCAAAGAGTGCTTTCAGACACCATAAGCCGAACTAGGTATGACGTGAAGCTTAGGTTGAACAAAACTTTTATGCCTCATCAAAATCAACAGAAGGCTCCTTCGAATTTCAATTCTGCAATGAAAAACAATGTCAGTCCCAACTTTACAAACTCAAACACCCAAAAGCAGCAGCAAAATAAGCAGCCCGCGCAGCAGCAGCAAAATAAGCAGCCCGCACAGCAGCAGCAGCAAAACGGCGTGCGCCGCACTTTTTGGACTGCCTGCCCATTTTGCACCGTGAGGTATCAGTACTATAGAGAAGTTATAAATAAATCTATTCGCTGTCAACAATGCCATAGGCCCTTCGTTGCATATATCGTGGACGGGCAAGGTTCGTCTCAAACAACTAACTCAAGTCAGCAAGCATTTGGCCAGCAGAAAGATGGTTTGAATAATGGTACTCGGAAGGAAAATGTCGGATCTCAAAGCAACTCGCATACTGAGAAGTCCAATACAAGGCCTTTCAACAATAAAGACCCTGTTGATGTCTCGGGAAAGCCAAGTGTGAAGAGAAAGTGGACTACACTGGAAGAACTCAATCTAAGCTCTGATTCTTCAAGCAGTAATGATTCTGATTCCGACAGTGAAATATTTGCTGGTGTGAATGGCTTTCCAGGTGTAAAAAACCATTCAACTGGGAAGCCACACAGATCTGTGCGACAGAAGCCTAATGTTTCCTACAGTGATAATATGAGTAACAATGACTTATTAAGACCTTCAAAAAAGGGTGGGGAGAATGGAGCACCTCGTGTTAATGGTCAAAGTCATAACGAGGCCGCTAAAATGAATGATCCGAATGGTTCAGCAGCTGATCCAAAAGATGAACATGAAAAGGTAAAGCCGAAACAAAATTTTCATTCAAAAGAGAGCTCACTGAATAGAAATGAGGGAAAAAATTGGGCAAATGGAAAAGAATCTGTGGGTGGATCAAAACAGATGGGTGAAACTTCAGAGCATTTTTCTCCAAATTTGATCTCTAAGGCAACAAATTGTCCTAATGCTTATGTCTATCTCAATGCTGAGTTCAGCGATTTTGACAAGGACAGAAAAAAAGAATGTTTTGCGCCTGGGCAGATTTGGGCTATCTATGATACAACAGATGGCATGCCTAGATTCTACGCTTTAATCAGAGAAGTTCTCTCTCCTGGATTTCATTTGAAGGCAACATGGCTTGAACCACATCCAGATGACCATGATGAAATCAAGTGGGTAGATAAGGAATTACCTGTGGCTTGTGGGAAATTTAAACTTGGTACCACTGAGATCATTAAAGATCATCTGATGTTTTCTCATCTAGCTCAGTGTGATAAGATTGGCCGCAATACTTTTAAAGTCTATCCTAGAAAGGGAGAAACATGGGCTCTTTTTAAAAATTGGGATATCAAATGGTACATGAATGCGGAATTTCGTAAGCAGTATAGATATGAGTTTGTGGAAATCTTGTCAGATTATGTCGAGGGTGAGGGTGTATCTGTTGTGTACTTGGGGAAGTTGAAAGGTTTTGTAAGCCTCTTTCAAATTATGAAAGATAACCGGCCATTTCAAATTCCATCCCTGGAGTTATTTAGATTTTCTCACAGGATTCCATCTTTCAAAATGACTGGTCAGGAAGGAGCAGGTGTTCAGTTAGGATATTTAGAATTTGATCCCGCATCTATACCAATGAATTTTGAAGAGCTTGCTGTTCCTCGAAATTTGAATGTGAAGATTGAGCATAGTTCACGTGGCAGTGAGAATACAAATTCTTCAAAAAAATCAAAACCCTTGACGAGGCCGGAAGAAATTGAATCCACTCCCAAGGTTAATATTGAACCAAGCAATCCGACAGAGATGAAAGATTCTCTTGATGATATGGATGACGACCATGCTACAACTTCAACCCTTGATGCTTTTGAAATTCCAGATGCTCAATTCTTCAACTTTGAAACTTGGAGGTCCCTTGACAAGTTCAAGATTGGTCAAATATGGGCATTTTACAGCGATGAAGATGGAATGCCAAAATACTATGGTGAGATTAAAAAAATTGAGACTAGCCCTGGTCTTGAGTTGCATGTTAATTGGCTTGCTTGCTCCCAGCTACCAGAGGGTACCACTAAATGGATAAATGAAGACATGCTTACTACCTGTGGCAAATTTAGAATCATGAAAACAAATGATTTTTTCTCTATTTACAATAGCCTGTCTTGTGTTTCACATCAAGTACAAGCTGAGGCTATCGGTAAGAGTTACGCCATCTATCCAAGAAAAGGTGAAGTATGGGCTGTATATAGCCAATGGTCAAACGATTTCAAGTGTTCTGATCTGAAAAATTTGGAGTATGACATAGTGGAAGTTCTTGAAGAAGCTTTCAAACTGACACAAGAGCATGGCAATCTCAACGGCTTCTGGGAGCTTGATCCAGGTGCGCTACCACCTTCATTCCTGTGGCCTTAG 2967 0.4065 MIIVCLIDLNLVVGVDVNLKAAHLLGDWWKWDFGSTLGYTLHSTVLRFESLMECNKEEALRAKDIAEKKMENKDFAGARKFALKAKQLYPDLDNISQMLIVCDVHCSAEKIVFENEKDWYGILQLEHTAGVAMIKKQFRKFALQLHPDKNKFSGAESAFKLIEEAQRVLSDTISRTRYDVKLRLNKTFMPHQNQQKAPSNFNSAMKNNVSPNFTNSNTQKQQQNKQPAQQQQNKQPAQQQQQNGVRRTFWTACPFCTVRYQYYREVINKSIRCQQCHRPFVAYIVDGQGSSQTTNSSQQAFGQQKDGLNNGTRKENVGSQSNSHTEKSNTRPFNNKDPVDVSGKPSVKRKWTTLEELNLSSDSSSSNDSDSDSEIFAGVNGFPGVKNHSTGKPHRSVRQKPNVSYSDNMSNNDLLRPSKKGGENGAPRVNGQSHNEAAKMNDPNGSAADPKDEHEKVKPKQNFHSKESSLNRNEGKNWANGKESVGGSKQMGETSEHFSPNLISKATNCPNAYVYLNAEFSDFDKDRKKECFAPGQIWAIYDTTDGMPRFYALIREVLSPGFHLKATWLEPHPDDHDEIKWVDKELPVACGKFKLGTTEIIKDHLMFSHLAQCDKIGRNTFKVYPRKGETWALFKNWDIKWYMNAEFRKQYRYEFVEILSDYVEGEGVSVVYLGKLKGFVSLFQIMKDNRPFQIPSLELFRFSHRIPSFKMTGQEGAGVQLGYLEFDPASIPMNFEELAVPRNLNVKIEHSSRGSENTNSSKKSKPLTRPEEIESTPKVNIEPSNPTEMKDSLDDMDDDHATTSTLDAFEIPDAQFFNFETWRSLDKFKIGQIWAFYSDEDGMPKYYGEIKKIETSPGLELHVNWLACSQLPEGTTKWINEDMLTTCGKFRIMKTNDFFSIYNSLSCVSHQVQAEAIGKSYAIYPRKGEVWAVYSQWSNDFKCSDLKNLEYDIVEVLEEAFKLTQEHGNLNGFWELDPGALPPSFLWP 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03908 988 SUPERFAMILY Chaperone J-domain 112 182 IPR036869 -
Vifa4g03908 988 Coils Coil 946 966 - -
Vifa4g03908 988 PRINTS DnaJ domain signature 154 174 IPR001623 -
Vifa4g03908 988 PRINTS DnaJ domain signature 120 138 IPR001623 -
Vifa4g03908 988 PRINTS DnaJ domain signature 138 153 IPR001623 -
Vifa4g03908 988 MobiDBLite consensus disorder prediction 189 244 - -
Vifa4g03908 988 Pfam DnaJ domain 118 179 IPR001623 -
Vifa4g03908 988 MobiDBLite consensus disorder prediction 396 417 - -
Vifa4g03908 988 Pfam Domain of unknown function (DUF3444) 513 715 IPR024593 -
Vifa4g03908 988 Pfam Domain of unknown function (DUF3444) 808 960 IPR024593 -
Vifa4g03908 988 MobiDBLite consensus disorder prediction 446 471 - -
Vifa4g03908 988 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 52 741 - -
Vifa4g03908 988 MobiDBLite consensus disorder prediction 749 799 - -
Vifa4g03908 988 SMART dnaj_3 117 174 IPR001623 -
Vifa4g03908 988 MobiDBLite consensus disorder prediction 291 336 - -
Vifa4g03908 988 ProSiteProfiles dnaJ domain profile. 118 182 IPR001623 -
Vifa4g03908 988 MobiDBLite consensus disorder prediction 353 374 - -
Vifa4g03908 988 MobiDBLite consensus disorder prediction 749 764 - -
Vifa4g03908 988 CDD DnaJ 118 171 IPR001623 -
Vifa4g03908 988 MobiDBLite consensus disorder prediction 472 497 - -
Vifa4g03908 988 MobiDBLite consensus disorder prediction 291 497 - -
Vifa4g03908 988 Gene3D DnaJ domain 106 207 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03908 Vifa-Chr4 1247904522 1247908415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03908 55 282 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.047 1.80e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03908 - - psat:127073362 1678.69