Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03907 ATGAGGGAATCGAATCAAACCCCCAGAAATTTGGTCTCTTCTTCAAAATCTCTTCTTTACCACTACCAGTTACTGCCAAGGGTTGATGTAAATTTGAAGGCTGCACATCTTTTGGGAGACTGGTGGAAGTGGGATTTTGGAAGTACACTTGGCTACACCTTGCACTCTACGGTTTTGAGATTTGAATCTTTGATGGAATGCAACAAAGAAGAGGCCTTAAGGGCCAAGGACATTGCTGAAAAGAAGATGGAAAACAAGGATTTCGCAGGGGCTCGTAAATTTGCTCTTAAGGCTAAGCAGTTGTATCCTGATTTGGATAATATATCTCAAATGCTCATTGTTTGTGATGTGCACTGCTCTGCAGAGAAGATAGTGTTCGAAAATGAGAAGGACTGGTATGGAATTCTTCAGCTAGAACACACAGCTGGTGTTGCAATGATTAAGAAGCAATTCCGAAAGTTTGCTCTTCAGCTTCATCCCGATAAAAACAAGTTTTCTGGTGCTGAATCTGCGTTTAAGCTGATTGAGGAAGCTCAAAGAGTGCTTTCAGACACCATAAGCCGAACTAGGTATGACGTGAAGCTTAGGTTGAACAAAACTTTTATGCCTCATCAAAATCAACAGAAGGCTCCTTCGAATTTCAATTCTGCAATGAAAAACAATGTCAGTCCCAACTTTACAAACTCAAACACCCAAAAGCAGCAGCAAAATAAGCAGCCCGCGCAGCAGCAGCAAAATAAGCAGCCCGCACAGCAGCAGCAGCAAAACGGCGTGCGCCGCACTTTTTGGACTGCCTGCCCATTTTGCACCGTGAGGTATCAGTACTATAGAGAAGTTATAAATAAATCTATTCGCTGTCAACAATGCCATAGGCCCTTCGTTGCATATATCGTGGACGGGCAAGGTTCGTCTCAAACAACTAACTCAAGTCAGCAAGCATTTGGCCAGCAGAAAGATGGTTTGAATAATGGTACTCGGAAGGAAAATGTCGGATCTCAAAGCAACTCGCATACTGAGAAGTCCAATACAAGGCCTTTCAACAATAAAGACCCTGTTGATGTCTCGGGAAAGCCAAGTGTGAAGAGAAAGTGGACTACACTGGAAGAACTCAATCTAAGCTCTGATTCTTCAAGCAGTAATGATTCTGATTCCGACAGTGAAATATTTGCTGGTGTGAATGGCTTTCCAGGTGTAAAAAACCATTCAACTGGGAAGCCACACAGATCTGTGCGACAGAAGCCTAATGTTTCCTACAGTGATAATATGAGTAACAATGACTTATTAAGACCTTCAAAAAAGGGTGGGGAGAATGGAGCACCTCGTGTTAATGGTCAAAGTCATAACGAGGCCGCTAAAATGAATGATCCGAATGGTTCAGCAGCTGATCCAAAAGATGAACATGAAAAGGTAAAGCCGAAACAAAATTTTCATTCAAAAGAGAGCTCACTGAATAGAAATGAGGGAAAAAATTGGGCAAATGGAAAAGAATCTGTGGGTGGATCAAAACAGATGGGTGAAACTTCAGAGCATTTTTCTCCAAATTTGATCTCTAAGGCAACAAATTGTCCTAATGCTTATGTCTATCTCAATGCTGAGTTCAGCGATTTTGACAAGGACAGAAAAAAAGAATGTTTTGCGCCTGGGCAGATTTGGGCTATCTATGATACAACAGATGGCATGCCTAGATTCTACGCTTTAATCAGAGAAGTTCTCTCTCCTGGATTTCATTTGAAGGCAACATGGCTTGAACCACATCCAGATGACCATGATGAAATCAAGTGGGTAGATAAGGAATTACCTGTGGCTTGTGGGAAATTTAAACTTGGTACCACTGAGATCATTAAAGATCATCTGATGTTTTCTCATCTAGCTCAGTGTGATAAGATTGGCCGCAATACTTTTAAAGTCTATCCTAGAAAGGGAGAAACATGGGCTCTTTTTAAAAATTGGGATATCAAATGGTACATGAATGCGGAATTTCGTAAGCAGTATAGATATGAGTTTGTGGAAATCTTGTCAGATTATGTCGAGGGTGAGGGTGTATCTGTTGTGTACTTGGGGAAGTTGAAAGGTTTTGTAAGCCTCTTTCAAATTATGAAAGATAACCGGCCATTTCAAATTCCATCCCTGGAGTTATTTAGATTTTCTCACAGGATTCCATCTTTCAAAATGACTGGTCAGGAAGGAGCAGGTGTTCAGTTAGGATATTTAGAATTTGATCCCGCATCTATACCAATGAATTTTGAAGAGCTTGCTGTTCCTCGAAATTTGAATGTGAAGATTGAGCATAGTTCACGTGGCAGTGAGAATACAAATTCTTCAAAAAAATCAAAACCCTTGACGAGGCCGGAAGAAATTGAATCCACTCCCAAGGTTAATATTGAACCAAGCAATCCGACAGAGATGAAAGATTCTCTTGATGATATGGATGACGACCATGCTACAACTTCAACCCTTGATGCTTTTGAAATTCCAGATGCTCAATTCTTCAACTTTGAAACTTGGAGGTCCCTTGACAAGTTCAAGATTGGTCAAATATGGGCATTTTACAGCGATGAAGATGGAATGCCAAAATACTATGGTGAGATTAAAAAAATTGAGACTAGCCCTGGTCTTGAGTTGCATGTTAATTGGCTTGCTTGCTCCCAGCTACCAGAGGGTACCACTAAATGGATAAATGAAGACATGCTTACTACCTGTGGCAAATTTAGAATCATGAAAACAAATGATTTTTTCTCTATTTACAATAGCCTGTCTTGTGTTTCACATCAAGTACAAGCTGAGGCTATCGGTAAGAGTTACGCCATCTATCCAAGAAAAGGTGAAGTATGGGCTGTATATAGCCAATGGTCAAACGATTTCAAGTGTTCTGATCTGAAAAATTTGGAGTATGACATAGTGGAAGTTCTTGAAGAAGCTTTCAAACTGACACAAGAGCATGGCAATCTCAACGGCTTCTGGGAGCTTGATCCAGGTGCGCTACCACCTTCATTCCTGTGGCCTTAG 3006 0.4088 MRESNQTPRNLVSSSKSLLYHYQLLPRVDVNLKAAHLLGDWWKWDFGSTLGYTLHSTVLRFESLMECNKEEALRAKDIAEKKMENKDFAGARKFALKAKQLYPDLDNISQMLIVCDVHCSAEKIVFENEKDWYGILQLEHTAGVAMIKKQFRKFALQLHPDKNKFSGAESAFKLIEEAQRVLSDTISRTRYDVKLRLNKTFMPHQNQQKAPSNFNSAMKNNVSPNFTNSNTQKQQQNKQPAQQQQNKQPAQQQQQNGVRRTFWTACPFCTVRYQYYREVINKSIRCQQCHRPFVAYIVDGQGSSQTTNSSQQAFGQQKDGLNNGTRKENVGSQSNSHTEKSNTRPFNNKDPVDVSGKPSVKRKWTTLEELNLSSDSSSSNDSDSDSEIFAGVNGFPGVKNHSTGKPHRSVRQKPNVSYSDNMSNNDLLRPSKKGGENGAPRVNGQSHNEAAKMNDPNGSAADPKDEHEKVKPKQNFHSKESSLNRNEGKNWANGKESVGGSKQMGETSEHFSPNLISKATNCPNAYVYLNAEFSDFDKDRKKECFAPGQIWAIYDTTDGMPRFYALIREVLSPGFHLKATWLEPHPDDHDEIKWVDKELPVACGKFKLGTTEIIKDHLMFSHLAQCDKIGRNTFKVYPRKGETWALFKNWDIKWYMNAEFRKQYRYEFVEILSDYVEGEGVSVVYLGKLKGFVSLFQIMKDNRPFQIPSLELFRFSHRIPSFKMTGQEGAGVQLGYLEFDPASIPMNFEELAVPRNLNVKIEHSSRGSENTNSSKKSKPLTRPEEIESTPKVNIEPSNPTEMKDSLDDMDDDHATTSTLDAFEIPDAQFFNFETWRSLDKFKIGQIWAFYSDEDGMPKYYGEIKKIETSPGLELHVNWLACSQLPEGTTKWINEDMLTTCGKFRIMKTNDFFSIYNSLSCVSHQVQAEAIGKSYAIYPRKGEVWAVYSQWSNDFKCSDLKNLEYDIVEVLEEAFKLTQEHGNLNGFWELDPGALPPSFLWP 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03907 1001 Pfam Domain of unknown function (DUF3444) 526 728 IPR024593 -
Vifa4g03907 1001 Pfam Domain of unknown function (DUF3444) 821 973 IPR024593 -
Vifa4g03907 1001 MobiDBLite consensus disorder prediction 304 510 - -
Vifa4g03907 1001 Pfam DnaJ domain 131 192 IPR001623 -
Vifa4g03907 1001 MobiDBLite consensus disorder prediction 485 510 - -
Vifa4g03907 1001 ProSiteProfiles dnaJ domain profile. 131 195 IPR001623 -
Vifa4g03907 1001 Gene3D DnaJ domain 119 220 IPR036869 -
Vifa4g03907 1001 Coils Coil 959 979 - -
Vifa4g03907 1001 CDD DnaJ 131 184 IPR001623 -
Vifa4g03907 1001 SUPERFAMILY Chaperone J-domain 125 195 IPR036869 -
Vifa4g03907 1001 PRINTS DnaJ domain signature 167 187 IPR001623 -
Vifa4g03907 1001 PRINTS DnaJ domain signature 133 151 IPR001623 -
Vifa4g03907 1001 PRINTS DnaJ domain signature 151 166 IPR001623 -
Vifa4g03907 1001 MobiDBLite consensus disorder prediction 762 812 - -
Vifa4g03907 1001 MobiDBLite consensus disorder prediction 409 430 - -
Vifa4g03907 1001 MobiDBLite consensus disorder prediction 459 484 - -
Vifa4g03907 1001 MobiDBLite consensus disorder prediction 304 349 - -
Vifa4g03907 1001 MobiDBLite consensus disorder prediction 762 777 - -
Vifa4g03907 1001 SMART dnaj_3 130 187 IPR001623 -
Vifa4g03907 1001 MobiDBLite consensus disorder prediction 366 387 - -
Vifa4g03907 1001 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 65 754 - -
Vifa4g03907 1001 MobiDBLite consensus disorder prediction 202 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03907 Vifa-Chr4 1247902786 1247908415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03907 68 295 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.047 2.00e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03907 - - psat:127073362 1684.85