Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03900 ATGGCTGGAGAAGGAGCTTTATACGAGAAACTCGCGACGATGATGACTTCTGACCACGCTTCCGTAGTGTCACTAAATATATTTGTTGCTCTTCTTTGTACTTGCATCGTCATCGGTCATCTGTTAGAGGAGAATCGATGGATTAATGAATCCATCACTGCTCTTCTCATTGGTTTGTGTACTGGTGTGTTAATATTGTTTACGACCGGAGGAAGAAGCTCGCATATAATGGTTTTTAGTGAAGATCTTTTCTTTATTTACCTTCTCCCACCCATCATTTTCAATGCCGGGTTTCAGGTCAAGAAGAAACAATTTTTCCGCAATTTTATAACTATAATGCTTTTCGGAGCAATTGGTACACTCATATCATTCTGCGTCATATCGTTAGGTGCCATACACTTCTTCGAAAAATTAAATATTGGTTCCCTCAAGATTGGAGATTATCTAGCAATTGGAGCAATATTTTCAGCAACAGATTCTGTTTGCACATTGCAGGTTCTTAACCAGGACGAGACACCTTTACTATACAGTTTAGTGTTCGGAGAAGGAGTAGTAAATGACGCAACTTCTGTAGTACTCTTCAAAGCAATTCAAAATTTTGACCTCTCCCACATTGATTTAACCACTGCTTTAGACTTAATCGGAAACTTTTTGTATCTATTCATAGCAAGCACTGTGTTGGGAATCTTTGTTGGATTGCTTAGTGCATATATCATTAAAAAGCTCTATTTTGGAAAGTTGATAAGACACTCTACGGATCGCGAGGTTGCTCTGATGATACTAATGGCTTACCTTTCGTATATGCTAGCTGAACTATTTTCTTTAAGTGCAATTTTGACTGTGTTCTTCTGCGGCATTCTTATGTCGCATTATACCTGGCATAATGTGACAGAAAGTTCAAGAGTAACAACAAAGCATACTTTTGCTACTATGTCATTTATTGCTGAGATCTTTATCTTCCTTTATGTTGGGATGGACGCACTAGATATCGAGAAATGGCGATTTGTAAGTCAAAGTCCGGGAAAATCAATTGGAGTCAGTTCGTTGCTGTTGGCGCTTATTCTAGTGGGAAGAGCTGCATTTGTTTTCCCTCTTTCCTTCATATCCAACTTGACTAAGAAGTCTCAATCTGAGAAAATTGAGTTTAAGCAACAGGTGACGATTTGGTGGGCTGGTCTGATGCGTGGCGCAGTTTCTATTGCACTTGCTTACAATCAGTTTACTAGGCTTGGCCATACGAAATTGCGCGAAAATGCGATCATGATCACTAGTACTATTAGTGTTGTACTCTTCAGCACAATGGTGTTTGGGTTATTGACGAAGCCACTAGTGAGGTTATTGCTTCCTTCATCTAAACACATAATAATCAGCATGCCGTCGACACCGTCGAGCCCGAAATCATTCAGTGTGCCACTTCTTGGCAATGAAGAGGATTATGTAGGGGGCAATGATGGGACACAAAGACCAAACAGATTGCGTTTGCTCCTTCGGATTCCAAGCCATGGGGTGCATCACTACTGGCGCAAATTCGACAATTGTTTCATGCGACCTGTCTTTGGTGGCCGGGGTTTTGTACCTTATGTTCCTGGCTCTCCCATTTAA 1602 0.407 MAGEGALYEKLATMMTSDHASVVSLNIFVALLCTCIVIGHLLEENRWINESITALLIGLCTGVLILFTTGGRSSHIMVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLISFCVISLGAIHFFEKLNIGSLKIGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAIQNFDLSHIDLTTALDLIGNFLYLFIASTVLGIFVGLLSAYIIKKLYFGKLIRHSTDREVALMILMAYLSYMLAELFSLSAILTVFFCGILMSHYTWHNVTESSRVTTKHTFATMSFIAEIFIFLYVGMDALDIEKWRFVSQSPGKSIGVSSLLLALILVGRAAFVFPLSFISNLTKKSQSEKIEFKQQVTIWWAGLMRGAVSIALAYNQFTRLGHTKLRENAIMITSTISVVLFSTMVFGLLTKPLVRLLLPSSKHIIISMPSTPSSPKSFSVPLLGNEEDYVGGNDGTQRPNRLRLLLRIPSHGVHHYWRKFDNCFMRPVFGGRGFVPYVPGSPI 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03900 533 Pfam Sodium/hydrogen exchanger family 27 445 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vifa4g03900 533 Gene3D - 144 196 - -
Vifa4g03900 533 PRINTS Na+/H+ exchanger signature 97 111 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa4g03900 533 PRINTS Na+/H+ exchanger signature 83 94 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa4g03900 533 PRINTS Na+/H+ exchanger signature 152 162 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa4g03900 533 PRINTS Na+/H+ exchanger signature 112 120 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa4g03900 533 PANTHER SODIUM/HYDROGEN EXCHANGER 16 519 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03900 Vifa-Chr4 1246313331 1246315954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03900 5 532 Antiporters AT3G05030 73.408 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03900 - - ccaj:109808409 911.753