Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03899 ATGGGGTGTGTGTTTGGGAAAGAGGCTTCACAGAGGAGGAAAGAGGAAGTGGAAGTTGGTAAATTAGAAGAGGTTAGGTGTGAGGTTCAAATTCAAAATGGTGAGAGTGAGAAAGAGGGTGGAGGAGAGGAGGAGGAGGAGGAGGAGAAGAGGAGGAGACAAAGGGAAAGGAGGGAGAGGAGGCGGTCTTTGAAGGCGAATCCGAGATTAAGCAATCCACCTAACTGTATACATGGTGAGCAAGTGGCTGCAGGGTGGCCTTCTTGGCTCTCCAAGGTTGCTGGAGAAGCCATACATGGATTGACGCCTCGAAGGGCCGACAGTTTTCACAAGATTGATAAGATTGGACAAGGTACATATAGCAATGTATACAAAGCTAAGGATACTTTAACTGGGAAAATTGTTGCACTAAAGAAGGTCCGATTCGATAATTTAGAGCCAGAGAGTGTGAAATTCATGGCCAGAGAAATTCTGATTCTGCGTCGTCTTGATCATCCCAATGTTGTCAAACTAGAAGGTTTGGTAACTTCTAGAATGTCATGTAGTTTGTATCTTGTCTTTCAATACATGGAGCATGATTTGGCAGGACTCTCTACGAGCCCGGATATTAAGTTTACGGTGTCTCAGATTAAATGCTACATGCATCAGCTATTGTCTGGACTGGAACACTGTCACAACTGTTATGTGCTGCATCGTGATATAAAGGGATCGAACCTTCTTGTTGACAATGAGGGAGTTCTTAGGATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTAATCACAAGCAACCTATGACTAGTAGGGTGGTTACTTTATGGTATCGATCTCCCGAACTTCTTCTAGGAGCCACCGATTATGATGTAGGCGTGGACCTGTGGAGTGCTGGCTGTATCCTTGGTGAACTGTTGGCTGGAAGGCCTATTATGCCTGGTCGAACCGAGGTGGAACAGCTGCATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAATATTGGAGAAGGGCAAAGCTACCACATGCTACCATTTTTAAGCCGAGGCAATCATATAAGCGGTGCATCGTAGAGAAGTTTGAAGATTTCCCGCTATCATCATTGCCACTAATTGAAACCCTTCTAGCAATCGATCCAGCTGAACGTCAAACTGCCACTGCTGCATTGCACAGCGAATTCTTTACAACACAGCCTTATGCTTGTGAACCCTCTAACCTTCCAAAATATCCTCCGAGCAAGGAGATGGATACAAAGCTAAGGGATGAAGAAGCTAGAAGACTAAGAGCAGCTGGCAAGGGTAATGCTGTTGGCAGTAAGAAGTCGCGTTCGCGTGATCGAAGTGGGAGGGGAATTGCAGTTCCAGAGGTCAATGCTGAGTTGCAAGAAAATATTGATAGATGGAGACTGATAACGCGCGCAAATGCAAAGAGCAAGAGTGAGAAGTTTCCTCCACCTCACCAAGATGGAACTTTAGGCTATCCTCTGAGTTCTTCATATCACATTGAACCAGTTTTTGATCCTCCTGATGTTCCGTTCAGTTTCACAGACTTCTCATATCATAAAGCAAGTATTCAGCACTGGTCTGGCCCATTGATGGAACCGAGGATGAGTGCACCAAGGAGAAAGAAGAACGAGGCAGGTGACCAGTACATGAGATCGAAGTCATTGAAGAAAAATATAAATAGATAG 1686 0.4472 MGCVFGKEASQRRKEEVEVGKLEEVRCEVQIQNGESEKEGGGEEEEEEEKRRRQRERRERRRSLKANPRLSNPPNCIHGEQVAAGWPSWLSKVAGEAIHGLTPRRADSFHKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFQYMEHDLAGLSTSPDIKFTVSQIKCYMHQLLSGLEHCHNCYVLHRDIKGSNLLVDNEGVLRIADFGLASFFDPNHKQPMTSRVVTLWYRSPELLLGATDYDVGVDLWSAGCILGELLAGRPIMPGRTEVEQLHKIFKLCGSPSEEYWRRAKLPHATIFKPRQSYKRCIVEKFEDFPLSSLPLIETLLAIDPAERQTATAALHSEFFTTQPYACEPSNLPKYPPSKEMDTKLRDEEARRLRAAGKGNAVGSKKSRSRDRSGRGIAVPEVNAELQENIDRWRLITRANAKSKSEKFPPPHQDGTLGYPLSSSYHIEPVFDPPDVPFSFTDFSYHKASIQHWSGPLMEPRMSAPRRKKNEAGDQYMRSKSLKKNINR 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03899 561 Gene3D Phosphorylase Kinase; domain 1 97 191 - -
Vifa4g03899 561 SMART serkin_6 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03899 561 MobiDBLite consensus disorder prediction 529 561 - -
Vifa4g03899 561 FunFam probable serine/threonine-protein kinase At1g54610 96 191 - -
Vifa4g03899 561 FunFam probable serine/threonine-protein kinase At1g54610 192 433 - -
Vifa4g03899 561 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Vifa4g03899 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Vifa4g03899 561 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03899 561 PANTHER CELL DIVISION PROTEIN KINASE 107 397 - -
Vifa4g03899 561 MobiDBLite consensus disorder prediction 427 449 - -
Vifa4g03899 561 CDD STKc_CDK9_like 109 393 - -
Vifa4g03899 561 SUPERFAMILY Protein kinase-like (PK-like) 103 398 IPR011009 -
Vifa4g03899 561 MobiDBLite consensus disorder prediction 535 551 - -
Vifa4g03899 561 Gene3D Transferase(Phosphotransferase) domain 1 192 431 - -
Vifa4g03899 561 MobiDBLite consensus disorder prediction 28 76 - -
Vifa4g03899 561 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03899 Vifa-Chr4 1245774393 1245777060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03899 104 431 Core Cell Cycle Gene Families AT5G10270 50.000 2.73e-111 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vifa4g03899 Pkinase 6.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03899 K08819 - gmx:100791757 856.284